LOCUS ADD44459.1 1849 aa PRT BCT 08-JAN-2015
DEFINITION Stackebrandtia nassauensis DSM 44728 hypothetical protein protein.
ACCESSION CP001778-4736
PROTEIN_ID ADD44459.1
SOURCE Stackebrandtia nassauensis DSM 44728
ORGANISM Stackebrandtia nassauensis DSM 44728
Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae;
Stackebrandtia.
REFERENCE 1 (bases 1 to 6841557)
AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina
Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S.,
Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Stackebrandtia nassauensis type strain
(LLR-40K-21T)
JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009)
PUBMED 21304662
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Stackebrandtia nassauensis DSM 44728
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082381
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM
44728
Culture Collection ID :: DSM 44728
GOLD Stamp ID :: Gc01107
Funding Program :: DOE-GEBA 2007
Number of Reads :: 81931 Sanger, 851638 pyrosequence
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 11x Sanger; 29x 454
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Soil sample from Nassau Bahamas
Isolation Country :: Bahamas
Latitude :: 25.066127
Longitude :: -77.339025
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
##Metadata-END##
FEATURES Qualifiers
source /organism="Stackebrandtia nassauensis DSM 44728"
/mol_type="genomic DNA"
/strain="DSM 44728"
/isolation_source="soil"
/culture_collection="DSM:44728"
/type_material="type strain of Stackebrandtia nassauensis"
/db_xref="taxon:446470"
/country="Bahamas: Nassau"
protein /locus_tag="Snas_4818"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: lch:Lcho_1807 WD-40 repeat-containing
protein"
/transl_table=11
/db_xref="InterPro:IPR001680"
BEGIN
1 MRLEQIISRY HPDFDVAEAR LGLGLDGLVY LVYARTHPLG HLIRVDPSGN GLREAIVGTS
61 CVAVAATADG TVAVAEVVGS ARVTFWDKNL TAQGQVGDFL HDGGNTLAPS DVQAGPSGDF
121 YAIDQYRLKV RRMSPRRGVV DTFGLERLNV VAGVNQPVGL RVDEERGRLV TAWNSAVIWA
181 SDFDGTPLWT KPIAFRPAGR FLGAYDLAAD GSVHVLESGN RVRVFGLDGV ERPAEAVTLK
241 GSALPVTYLR VHGDELVVKR VDRETLFEVY ERGTGELRRR VPAELERLTA EYPDPVWEAG
301 KPVPLTITHD SGPYGSAPGF RAWLRPLGVP EFTALPITGQ TVTPSADAGG LYQLRVSPDL
361 RGGLSEYVLD GVVEVQKKDA IGTISILTKR NRFYFGKGEP IPFTVEARTT KTPPTAVTVR
421 VRHGDDTVKE VPVTLDAGTG DARLTAADTG TLTPGRYTLD VEVPGFTVAP QYLELGPGIA
481 VRPTFHITRH GDYKDSLPVD RRVKGFAKPS IFADLPDDID THLVRSRKLG INLLIDRLGK
541 GSFLPRFTPI IADKATHDRL VRNPSGVSPG KVEFEDALWR AIAGYGAYGI EEQSILLTMD
601 AGLPLGTFGD TRTPAEMLLD IEDVVNKLRD YPAFRGWSWA ANWWLIKLGA AAAKDETERQ
661 EYVRALAAAK ETGAWATVLD TVSDRIWDLK VAAEALFHDK LTAIAPGQIS AITGPYRALG
721 THPPVNFANA DEVDLHYQAE QIPPPLTGAH QVDFYRRPGK PARGHPEPRN DDGTGAMFAA
781 ALFPMAMRGV DGTGSASPFG DVGSAHGGVL AGDPRSDGTG PRPGDVRSGG AGKTTMLRAI
841 QRTIARYGST MAGTEPADAI AIVVSSRMQR IDEASGNGDF GGYFSALFEA YNTCLYAHRP
901 ASFVFTEDLT PDTLAAYRAV LVVGQKVTLE PPLAAALDAL DSDAVKVYFD DTCRPELMPG
961 YAQRLGVSFN RVATDPSAKD DSAHWRFREY FITHSETLRE LLDDVVPPVA GCDNPEVLLS
1021 ERRDGEVRYV WAVNNTVLDW EPGLTWRVSM FAAHRVPVVA ELDLRVPLGY KVFDVYAGKT
1081 VGTLGGKVTA DLRTMPVRLY AILPLLHPLP EHRTPVAQDW FGPHVRDIAI ADDGRTGVLS
1141 CFNWDHNLYG LDLRTGSTRW REKVGHFFAF GPTAYRGGIA AQGYDVDSPE GYHLYLVNPA
1201 GEAERRFALF GLPKRATEWS TPEWGLDTGL NNFAVSPDGA WVATCGDLGL AVWDRDGTRR
1261 WTDAWWSDRR DPLRLLAFDA STLLTYVRGT VTARAAADGA TLWSLRLAET GHLQGAAVSA
1321 DRSTLLFWST TLGGRMFVVR DQTVTNTIAT GPTDEVSVSA DGSLIATTAD RQLLVWDANG
1381 GLVWTYTGDD LLRRPEVSPD GERIAVGSEL GTLTVLDRHG AILCEKDLLS LPVSTWLPGG
1441 DLLVATWTGE VTRFDGDLDV RWSTKLAPTE TDAAAKLRAP DPTPTTRVTG WGNAEDIPLS
1501 LTPNLLAATR ALINPLGSVN DVPYTYTWRH PLALLRDGKP DAPPTPWLQW NIIGVIDSPV
1561 YKKLAVDIDA VVHRMHVTGV TFAEDPDHPE SWLRDVRLRY WDIEAEAWRD GPMLLSDAPL
1621 HSHVLPTPID ARRFQLVTTG GGSWPVGNLR LGELVFHGSV LGSSHPDVIH DRPAAVLFDE
1681 QRRLETLVNS PFVDYHYGDA VGDGRLSIEL TGAVAVHPTH QSPYPHRIPD WDFTIVEHPS
1741 APGQYRHLQF AWKATSGDTT GIRIRIGHEW PGAAVDVVVG DDPGFGRPPF AEVRVPGDRP
1801 PTQWRTVRLD LWALKVPDVQ GLSLRATGGG ARFDQFVLGR TPADLPEEL
//