LOCUS ADD43706.1 1690 aa PRT BCT 08-JAN-2015
DEFINITION Stackebrandtia nassauensis DSM 44728 amino acid adenylation
domain protein protein.
ACCESSION CP001778-3983
PROTEIN_ID ADD43706.1
SOURCE Stackebrandtia nassauensis DSM 44728
ORGANISM Stackebrandtia nassauensis DSM 44728
Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae;
Stackebrandtia.
REFERENCE 1 (bases 1 to 6841557)
AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina
Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S.,
Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Stackebrandtia nassauensis type strain
(LLR-40K-21T)
JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009)
PUBMED 21304662
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Stackebrandtia nassauensis DSM 44728
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082381
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM
44728
Culture Collection ID :: DSM 44728
GOLD Stamp ID :: Gc01107
Funding Program :: DOE-GEBA 2007
Number of Reads :: 81931 Sanger, 851638 pyrosequence
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 11x Sanger; 29x 454
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Soil sample from Nassau Bahamas
Isolation Country :: Bahamas
Latitude :: 25.066127
Longitude :: -77.339025
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
##Metadata-END##
FEATURES Qualifiers
source /organism="Stackebrandtia nassauensis DSM 44728"
/mol_type="genomic DNA"
/strain="DSM 44728"
/isolation_source="soil"
/culture_collection="DSM:44728"
/type_material="type strain of Stackebrandtia nassauensis"
/db_xref="taxon:446470"
/country="Bahamas: Nassau"
protein /locus_tag="Snas_4054"
/inference="protein motif:TFAM:TIGR01733"
/note="TIGRFAM: amino acid adenylation domain protein;
PFAM: AMP-dependent synthetase and ligase;
phosphopantetheine-binding; condensation domain protein;
KEGG: scl:sce0345 NRPS/PKS hybrid"
/transl_table=11
/db_xref="InterPro:IPR000873"
/db_xref="InterPro:IPR001242"
/db_xref="InterPro:IPR006162"
/db_xref="InterPro:IPR006163"
/db_xref="InterPro:IPR010071"
BEGIN
1 MDQNNTDNSA NDADSSLIEQ FEAQVKLNPT TVAVEVGDTR LSYRELNDRA DQVSAALQLR
61 GAGPDTVVAT LLPRGIDLTV AMVGVIKAGA AYLTMDTSAP AQRLATMITA AGAPWLLTDA
121 AHCPEGLTDA VDAEPILMDS PDLHGAGLVP PATAGHPDDL AYVVFTSGST GDPKGIMVSH
181 ASLADIVAWH RGSHAISPGD RLSMMMSPSF DAFVTEIWPA LTSGATICVV DDAVRTDPPR
241 MRDWLLRNEI NVAALPTPLA DALVGLDWPA TASLRIAHTG GDRLTKRPHP DAPFTLVNCY
301 GPSETTVDAT AGAVTPEPAD GRLPSIGREL PGVTAHLLDA ELRPVEPGQA GELYLGGVSL
361 ARGYIGQPAL TADRFVPDPF DSRGGRRLYR TGDLVRRLPD GRLEFVNRND AQIQVRGHRV
421 EPAEVAAALL THPDLEQAFV HGLDQPGGPL LAAHVVPRDP RRVPTVKALR EHLRHRLPDY
481 MVPAVFVTVD ALPLLATGKV DVSLLSKVGT GKPLTDTPYR APRDGLETRL AAIWCEVLNL
541 ERVGIDDDLF LLGGHSLTAT TIAARIRTDE GVEVSVADIL TTTTIAALAE LVTGRRGTPG
601 TLPSLTATER TRAPMSRQQE QVWFLEKLNP DSIAYHAQAT IRVVGELDLD VLDRVLTEID
661 RRHAIFRTTY VEDETGRWQV IHPPAPTTAR RIDLSGLPEP KRSQRCEELV ATEMRRRFDL
721 AKLPLCRWTA VRLSDDEHEL IFVEHHLVHD GWSSSLVVRE LKELYGAFLA GEESPLPELP
781 AQYHDFAVWQ HDELENGGPL SKQLDFWRER MADPPDPLTI HPDRPRPAVS ANQGNMLRVD
841 LPASLPSALR EFCRDQRVTL FSAMFAGFAA LLHRYTALSD LCIASAYANR RIPDTQAMIG
901 MFVNPVLLRC RVEPGDDFAA LVRQSANLLA EASDYQEYPF PELVRALNPE RDTSTQPLTQ
961 VMFSAHDSAV PELDLGPASA TVFERGNGSA KMDLDVVVLP RAESQARDSE AVDERITLLW
1021 EYNSELFDTE TMHRMAGHYI RLLELAVAEP DSPITRLPLA SRGEVQRALA EWNPPSRPHQ
1081 PPLVPDEVFA RAAEHPEAIA VAADASTLTY GRLAERATAL AGRLPDSGVV GVLLPRGADL
1141 AVAELGVMAS GAAFVPIDVG APGARIAYLC EDAAITTVVT TAQHAAKLPE TVTAVLIEQL
1201 SMAEAVERRS PGPDDPAYVI YTSGSTGAPK GVVVSHGAMA NLVAWHREQL ALSAEDRFTM
1261 VASPAFDVSI GEIWPALASG ASLSIPDDSV RLVPERLRDW LCDNRITVTD LPVALVESLL
1321 SVDWPKPNAL RLMLTGGDRL TKRPPGSLPF QVLNAYGPTE ATVTATSGVV GTDGSSLRPP
1381 SIGRPITGAR AYVLDGELEP CVVGVPGELY LGGAGVALGY LNRPGLTADR FVPDPFAATP
1441 GQRLYRTGDL VRQLPDGRLE FLERNDSQIK LRGHRIEPAE IAAALREHDA VEQAHVTLRS
1501 RTRTGSAGAA DQLVAFLTAA GSDRPEAARL REHLADRLPS YMVPAAFAWI DTLPLNQNGK
1561 VDTSRLTAPE PETATAATAL APDNDLEQRL VQLWKEVLER DEVGVGDNFF DLGGHSLLLG
1621 HLHHRMTTEL DIDLPIVALF QHTSIRAVSR HLSGAGPTNG TTPVQARARR AGNARLNRRR
1681 NQRRSSEESQ
//