LOCUS ADD42988.1 1089 aa PRT BCT 08-JAN-2015 DEFINITION Stackebrandtia nassauensis DSM 44728 alpha-1,2-mannosidase protein. ACCESSION CP001778-3265 PROTEIN_ID ADD42988.1 SOURCE Stackebrandtia nassauensis DSM 44728 ORGANISM Stackebrandtia nassauensis DSM 44728 Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia. REFERENCE 1 (bases 1 to 6841557) AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S., Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P. TITLE Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21T) JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009) PUBMED 21304662 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6841557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Stackebrandtia nassauensis DSM 44728 JOURNAL Unpublished REFERENCE 3 (bases 1 to 6841557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082381 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM 44728 Culture Collection ID :: DSM 44728 GOLD Stamp ID :: Gc01107 Funding Program :: DOE-GEBA 2007 Number of Reads :: 81931 Sanger, 851638 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11x Sanger; 29x 454 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Soil sample from Nassau Bahamas Isolation Country :: Bahamas Latitude :: 25.066127 Longitude :: -77.339025 Oxygen Requirement :: Aerobe Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 28C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## FEATURES Qualifiers source /organism="Stackebrandtia nassauensis DSM 44728" /mol_type="genomic DNA" /strain="DSM 44728" /isolation_source="soil" /culture_collection="DSM:44728" /type_material="type strain of Stackebrandtia nassauensis" /db_xref="taxon:446470" /country="Bahamas: Nassau" protein /locus_tag="Snas_3322" /inference="protein motif:TFAM:TIGR01180" /note="TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: smt:Smal_1774 alpha-1,2-mannosidase" /transl_table=11 /db_xref="InterPro:IPR005887" /db_xref="InterPro:IPR012939" BEGIN 1 MLSASKRVNA VLAAAVLAVG LLVPSSAVAV EPEDPTTLVN PFVGTQNFGN TFPGASAPFG 61 MVQISPDTGG QGGYDYQQDK IHGFSQTHLS GVGCGVSGEL PIMPTTGEVD TVDPEKYRSK 121 YSHDDEEATP GYYQVGLSSY DINAELTATK RTGWQRYTFP DTDAANLMFN TGKANQSVHD 181 SEVHVVGDRT VEGRVTAGGF CAGKDKHTVY FTATFDQPFD SYGTWRDKTI RPDTRDASGE 241 GGNGAWIGFD ASKDREVVAK VGLSYTGMDG ARKNLDAETG DSYDFDAVRE QLHDDWVDKL 301 NSITITGGTK ERREAFYTAL YHAQLHPNLA GDVDGRYTGF DGEVHTAKGF TPYQNLSLWD 361 TYRPQNQLLE MLEPQVARDV ALSIVAIGRE GGWLPRWALA NSETNIMTGD PVTPFLVEAW 421 SKGLLAGHED EAYELLKQNA TSTPPKDSPY NGRSGIDYYL KRGYIPSGLD LETDCAHKGG 481 DNDCKHPASA TLEYAAADSA LALMADGLGH GSDAKKFAAR GQWYRNLWDD KTGHFRPRTG 541 DGTWLTPYDP VSADHQFHEG GAYQYQWLVP QDPAGLVDLM GGETDTEKRL DDFFVYDKLL 601 TDPEGTARED WITDPYDYYG KPTYNPNNEP DLLAPYMYLW AGAPAKTATV VRAAMTLFTT 661 GPDGMTGNDD LGTMSAWYVY SSLGMYPTMS GGDFLALSSP QFDSATVTIG EYGDRQGGTL 721 NITAPGASDT KRYVQNVSLN GEDVSQTWLD WGDIAHGGDI AQELGTSPSD WGTGDGDQPP 781 SVGKADPDGR RHLDASLRPA TAVIGESDAA QTVALSADVL GQAPGDLKVS MKAKAPKGWD 841 VALKPKPPLR ISSDHLPTQK TVGVSVTVPA GTAKGEYPIE ITSKASGANR VTKKATVEVR 901 SAATCASTDD GQCAVELSEA ANHDGTATTA ASEEGDFDGQ GWSYDAELLP KAGPVTWDDV 961 TYVAPDPSGT AENFTEAKGQ AMLLPEGDYG KLSVVASAHN GPVSTALTVR YTDGSSEDIP 1021 VTVGDWAGST PSGSTVALEM PHRIKAGQGT DGPSVRLYGS SLTLDSGKKV QSVTLPDDAR 1081 VEVYAITLL //