LOCUS ADD42649.1 708 aa PRT BCT 08-JAN-2015 DEFINITION Stackebrandtia nassauensis DSM 44728 excinuclease ABC, C subunit protein. ACCESSION CP001778-2926 PROTEIN_ID ADD42649.1 SOURCE Stackebrandtia nassauensis DSM 44728 ORGANISM Stackebrandtia nassauensis DSM 44728 Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia. REFERENCE 1 (bases 1 to 6841557) AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S., Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P. TITLE Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21T) JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009) PUBMED 21304662 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6841557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Stackebrandtia nassauensis DSM 44728 JOURNAL Unpublished REFERENCE 3 (bases 1 to 6841557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082381 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM 44728 Culture Collection ID :: DSM 44728 GOLD Stamp ID :: Gc01107 Funding Program :: DOE-GEBA 2007 Number of Reads :: 81931 Sanger, 851638 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11x Sanger; 29x 454 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Soil sample from Nassau Bahamas Isolation Country :: Bahamas Latitude :: 25.066127 Longitude :: -77.339025 Oxygen Requirement :: Aerobe Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 28C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## FEATURES Qualifiers source /organism="Stackebrandtia nassauensis DSM 44728" /mol_type="genomic DNA" /strain="DSM 44728" /isolation_source="soil" /culture_collection="DSM:44728" /type_material="type strain of Stackebrandtia nassauensis" /db_xref="taxon:446470" /country="Bahamas: Nassau" protein /locus_tag="Snas_2975" /inference="protein motif:TFAM:TIGR00194" /note="KEGG: tgr:Tgr7_1907 excinuclease ABC subunit C; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; helix-hairpin- helix motif; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1" /transl_table=11 /db_xref="InterPro:IPR000305" /db_xref="InterPro:IPR000445" /db_xref="InterPro:IPR001162" /db_xref="InterPro:IPR001943" /db_xref="InterPro:IPR003583" /db_xref="InterPro:IPR004791" BEGIN 1 MTHPAVNLSD VVTETGASLP YRPAPGTIPE SPGVYRFRDT DGRVIYVGKA KSLRQRLNSY 61 FADPTKLHPR TYQMVHTATS VDWVVLATEV EALQLEYTWI KKYDPRFNVM YRDDKSYPYL 121 AVTLDEEYPR LQVMRGDRRK GVRYFGPYSH AWAIRETLDL LLRVFPARTC GASVFNRARK 181 INRPCLLGDI GKCAAPCVGR VSAAEHREIV DEFCAFMAGK TDTFVKRVEA EMHEASEALD 241 FERAARRRDD LAALHRALEK QLVVLAEDKG TDIDVVEMFD DELQAAVQVF HVRGGRVTGQ 301 RGWIVDKPEG VTDGDLVHSL CTQFYGGRSG KDIPKEVLVP ALPEDATALT DWLSELRGSK 361 VGVRIPQRGD KKALAETVKR NAEQALVQHK LKRASDLTTR GKALEELAEA LDLPGAPLRI 421 ECFDVSQMQG TDVVASMVVF EDGLPRKAEY RRFVVRGERT DDLASMHEVL TRRLSKVDES 481 APLIDEDGKK RRFAYPPQLL VVDGGAPQVA VADNVLAEQG IDTVNVCGLA KRLEEVWLPG 541 EEYPVILPRR SEALYLLQRV RDEAHRFAIS LHRKRRGKKV TASALDSVPG LGPTRRKALL 601 RHFGSVKKIR EATVDEIAEV TGIGPALAAT ITASLTEGAT PTAAADQPET VAEGDKPEAD 661 ARDTEPRPSD AAESESSGTE PSDAVSSAEA PVTQDGSGLG NPGHDAGS //