LOCUS ADD41553.1 955 aa PRT BCT 08-JAN-2015 DEFINITION Stackebrandtia nassauensis DSM 44728 preprotein translocase, SecA subunit protein. ACCESSION CP001778-1830 PROTEIN_ID ADD41553.1 SOURCE Stackebrandtia nassauensis DSM 44728 ORGANISM Stackebrandtia nassauensis DSM 44728 Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia. REFERENCE 1 (bases 1 to 6841557) AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S., Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P. TITLE Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21T) JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009) PUBMED 21304662 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6841557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Stackebrandtia nassauensis DSM 44728 JOURNAL Unpublished REFERENCE 3 (bases 1 to 6841557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082381 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM 44728 Culture Collection ID :: DSM 44728 GOLD Stamp ID :: Gc01107 Funding Program :: DOE-GEBA 2007 Number of Reads :: 81931 Sanger, 851638 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11x Sanger; 29x 454 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Soil sample from Nassau Bahamas Isolation Country :: Bahamas Latitude :: 25.066127 Longitude :: -77.339025 Oxygen Requirement :: Aerobe Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 28C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## FEATURES Qualifiers source /organism="Stackebrandtia nassauensis DSM 44728" /mol_type="genomic DNA" /strain="DSM 44728" /isolation_source="soil" /culture_collection="DSM:44728" /type_material="type strain of Stackebrandtia nassauensis" /db_xref="taxon:446470" /country="Bahamas: Nassau" protein /locus_tag="Snas_1857" /inference="protein motif:TFAM:TIGR00963" /note="TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; SEC-C motif domain protein; KEGG: pca:Pcar_2323 preprotein translocase subunit SecA" /transl_table=11 /db_xref="InterPro:IPR000185" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR004027" /db_xref="InterPro:IPR011115" /db_xref="InterPro:IPR011116" /db_xref="InterPro:IPR011130" /db_xref="InterPro:IPR014018" /db_xref="InterPro:IPR014021" BEGIN 1 MSMFEKLLRA GEGRELKRLK AITKEVNRLD DEYSEYTDAE LREETDELKQ RYANGESLDE 61 LLPSAFATVR EAAHRVRGMR HFDVQIMGGA ALHRGNIAEM KTGEGKTLVA TLPAYLNALT 121 GQGVHIVTTN DYLAQRDAEW MGEIHRFLGL SVGVVLSGQN SAKHREAYEC DITYGTNNEF 181 GFDYLRDNMA RTRDGRVQRG HFFAIVDEVD SILIDEARTP LIISGPAAQS QRWYGQFAKL 241 AARMRRDDHY EVDEAKNTIS VTEKGVALVE DQLGVENLYE PENTPLVGYL NNSIKSKELF 301 KKDKDYIVSD DGEVLIVDQF TGRVLHGRRY NEGMHQAIEA KEGVAIKQEN QTLATTTLQN 361 YFRQYDKLAG MTGTAHTEAG EFHKVYGVDV VAIPTHREMV RSDENDVIYK TEEAKFQAVV 421 DDIVERHETG QPVLVGTVSV DNSELLAREL KKRGVEHSVL NAKFHAKEAE IIAQAGRKGA 481 VTVSTNMAGR GTDILLGGNP EYLATAELRR RGIDEADEEK YAKEWDKALE KWEAACEEEG 541 DEVRDAGGLY VLGTERHESR RIDNQLRGRA GRQGDPGESR FYLSLRDDLM RKFNAAAVEA 601 LMNSLKMPEN MPIEHKMVTR MIRSAQAQIE GQNAEARKNV LEYDEVLNNQ REVIYGERRK 661 VLDGQDVSQQ IKHMMDDVIV AYVNGATEDG YTEDWDLDEL WSGFKQLYPI GITVAELEDS 721 VGGREKLEPA SIAEAVQDDI HKAYETREEE LGGPEIMRNL ERDVLLQVID TKWREHLYEM 781 DYLKEGIRLR AYAQRDPVVE YKREGFDMFN VMLDGIKEDT VRYLFSLSVQ VKESEEAEAA 841 PEPAARPGRR KPKPRPSSSA MTTVTARGGL AGAAEPEEQL QYSAPSVDGD PSDDEAPSAL 901 RKGGRKAGPS SKAASGAKQA NPNQRVGSTP GRNEDCPCGS GKKYKRCHGA PGAKN //