LOCUS ADD41298.1 1109 aa PRT BCT 08-JAN-2015
DEFINITION Stackebrandtia nassauensis DSM 44728 conserved hypothetical
protein protein.
ACCESSION CP001778-1575
PROTEIN_ID ADD41298.1
SOURCE Stackebrandtia nassauensis DSM 44728
ORGANISM Stackebrandtia nassauensis DSM 44728
Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae;
Stackebrandtia.
REFERENCE 1 (bases 1 to 6841557)
AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina
Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S.,
Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Stackebrandtia nassauensis type strain
(LLR-40K-21T)
JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009)
PUBMED 21304662
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Stackebrandtia nassauensis DSM 44728
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082381
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM
44728
Culture Collection ID :: DSM 44728
GOLD Stamp ID :: Gc01107
Funding Program :: DOE-GEBA 2007
Number of Reads :: 81931 Sanger, 851638 pyrosequence
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 11x Sanger; 29x 454
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Soil sample from Nassau Bahamas
Isolation Country :: Bahamas
Latitude :: 25.066127
Longitude :: -77.339025
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
##Metadata-END##
FEATURES Qualifiers
source /organism="Stackebrandtia nassauensis DSM 44728"
/mol_type="genomic DNA"
/strain="DSM 44728"
/isolation_source="soil"
/culture_collection="DSM:44728"
/type_material="type strain of Stackebrandtia nassauensis"
/db_xref="taxon:446470"
/country="Bahamas: Nassau"
protein /locus_tag="Snas_1595"
/inference="similar to AA sequence:KEGG:Rsph17029_1849"
/note="KEGG: rsh:Rsph17029_1849 hypothetical protein"
/transl_table=11
BEGIN
1 MATSNRDRIG QMFDLLAPQL DGFLSRILNR QLGAGRTWVD IVTAAEANNG REVHHGDISI
61 QLKLITQNYT NRFRSGWNPL RSHLNRTHEA YASELLQVRH TWAHGKAFTD DDAYRALDTA
121 QRLATAIGAA GTSDDIAQIR LNLRRVTADK DDKKALKAAV DNPEASGLKP WREVLPPHDD
181 VATGNFHASE FAADLYKVST GGELDTDYSD PVEFFNRTYL TEGLRDLITR AVRRLSGDDN
241 ASPVINLQTN FGGGKTHSML SLWHIAAGLP IGEFSQDTQE LLTASGYNGE KINRVAIVGN
301 HLSPTGSTKN DGMQVNTIWG ELAWQLGGAE AFELVAAADR DRTHPGDALH DLLALYSPAV
361 ILIDEWVAYA RSLVGRDDLA GGTFDDQFTF AQSLTETAKG TSGILLAISI PASERGENAE
421 PVAGTAEEVG GTNGLEALER LQNVVRRVAD QWRPASSDEA YHIVKQRLFK QVDAAALAAI
481 SATARAYVDM YRKYTDDFPR EARNSAYENR IKRTYPIHPE LFDTLYEEWS SLERFQRTRG
541 VLRLMSMVIH ALWTGEDAAP LIMPSSIPLA AGKVNSELTQ YLQDSWKAII DADVDGPNSE
601 PARIDAEKPL YGQRSLTKRL ARTVFFGAAP TIAPKSIHKG VSAKRVFLGT AVPGDVPGNF
661 HSALTRLCDR ATYFYSGSGK YWYDLQPNIT RTAKDQAERL HKEDVWADIV RRLKHQTNTR
721 GDFTGLHICP ETNADIPDTD EARLAILHPK VAHKRAIESV AKDFAKRATE QRGSANRTHR
781 NMLVYLAADE DRLEELEAAI RDYLGWKHVL DNEVDLDLTQ NQKKQAEQRQ EQADQTVTTR
841 LLQTFVWALI PAQPDPSAPF VVREIKVEGQ SDALAERVSR RLSNDGDLST RQAAATIRLA
901 INKVPQIWND GHVSLGTLWG LCSQYPYMPR LRDRRVLNEG IVDIPLIWQT DAFALAEGYE
961 ESDGHYVNLW IPDDNRPPPP ATDSLLVVRP DVATAQRNTE EATAEPIVGP IGLDTENPIK
1021 PDPQHPSPQH LHVKTRFFGV KTLNSEKMAL GFKNIAEEVI AHLRADTSTV TVRIEIEATD
1081 ESGFDENRVR TVSENARTLK FDQSGFEES
//