LOCUS ADD41297.1 920 aa PRT BCT 08-JAN-2015
DEFINITION Stackebrandtia nassauensis DSM 44728 protein of unknown
function DUF1156 protein.
ACCESSION CP001778-1574
PROTEIN_ID ADD41297.1
SOURCE Stackebrandtia nassauensis DSM 44728
ORGANISM Stackebrandtia nassauensis DSM 44728
Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae;
Stackebrandtia.
REFERENCE 1 (bases 1 to 6841557)
AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina
Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S.,
Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Stackebrandtia nassauensis type strain
(LLR-40K-21T)
JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009)
PUBMED 21304662
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Stackebrandtia nassauensis DSM 44728
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082381
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM
44728
Culture Collection ID :: DSM 44728
GOLD Stamp ID :: Gc01107
Funding Program :: DOE-GEBA 2007
Number of Reads :: 81931 Sanger, 851638 pyrosequence
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 11x Sanger; 29x 454
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Soil sample from Nassau Bahamas
Isolation Country :: Bahamas
Latitude :: 25.066127
Longitude :: -77.339025
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
##Metadata-END##
FEATURES Qualifiers
source /organism="Stackebrandtia nassauensis DSM 44728"
/mol_type="genomic DNA"
/strain="DSM 44728"
/isolation_source="soil"
/culture_collection="DSM:44728"
/type_material="type strain of Stackebrandtia nassauensis"
/db_xref="taxon:446470"
/country="Bahamas: Nassau"
protein /locus_tag="Snas_1594"
/inference="protein motif:PFAM:PF06634"
/note="PFAM: protein of unknown function DUF1156; KEGG:
xau:Xaut_2991 hypothetical protein"
/transl_table=11
/db_xref="InterPro:IPR009537"
BEGIN
1 MRKRKLIEVA LPLEAINRES AREKSIRHGH PSTLHLWWAR RPLAAARAVL FAQLVDDPSS
61 RPEEFPTEEL QRKERERLHK LIERLVVWEN ARDEKLFAEA YAEILNSTND YPPPILDPFA
121 GGGSIPLEAK RLGLEAYASD LNPVAVLINK ALIELPPKFH GQLPVFPGLA DSEFRVWKGT
181 QGLAADVRAY GAWMGEEAED RIGHLYPKAH LPDGSKATVI AWIWARSVTC PNPACRIEMP
241 LVRSWWLGKK KGKEAYVVPS VVADPSHTSG YRVKFEIGHD TAGMPTKESD GTMSGRKGGS
301 CIACGSLVSK DHIKSEGMAG RMGATLMAVV TEGKRQRIYI SPTEEHVTAA QVERPNDVPE
361 QELGYDPRNI WTPQYGLTKF SDLFTNRQLV ALTTFSDLIS EARDRVLADG GKTEYADAVS
421 TYLGLVVSKM TDRNSTLVNW YVSRESTSST FARQALPMVW DFAEVEPLGA NTGSFSNSLL
481 WTAEAIEGLC SKGGTSISQS DAASRRYNGV PLSTDPPYYD NISYSDLSDY FYVWLRRSLW
541 SIYPDLFATV LVPKEQELVA NPYRHGGKAK ARKFFEDGFR KVFTLARNAD RMGLPITVYY
601 AFKQNSIDET GKASTGWETF LESMIHAGWE ITSTWPLRSE LSNRMLASGT NSLASSIVLS
661 LRPCPKNAST TDRRGFIRAL EAELPEALRK MQHGQISPVD LPQAAIGPGM AVFSRYAAVI
721 ENDGSKMSVR SALARINEVL DQVLSEQEGD FDETTRFAVT WYRQHGYGAG EFGNADSLAR
781 ARNTSVDTMS GAGILTSRAS KVQLIRPLDL PKKYHVLQDG VTSNWEALHH LVKIVERNGI
841 PRAGEFLHTA LSRSEEEINA DIIKELGHLL FRISENHGWA HDALSFNNLV TSWPEILEAA
901 RSAEEPGYMQ PSLNLPDEDN
//