LOCUS ADD40774.1 1226 aa PRT BCT 08-JAN-2015
DEFINITION Stackebrandtia nassauensis DSM 44728 adenylate/guanylate
cyclase with TPR repeats protein.
ACCESSION CP001778-1051
PROTEIN_ID ADD40774.1
SOURCE Stackebrandtia nassauensis DSM 44728
ORGANISM Stackebrandtia nassauensis DSM 44728
Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae;
Stackebrandtia.
REFERENCE 1 (bases 1 to 6841557)
AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina
Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S.,
Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Stackebrandtia nassauensis type strain
(LLR-40K-21T)
JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009)
PUBMED 21304662
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Stackebrandtia nassauensis DSM 44728
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082381
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM
44728
Culture Collection ID :: DSM 44728
GOLD Stamp ID :: Gc01107
Funding Program :: DOE-GEBA 2007
Number of Reads :: 81931 Sanger, 851638 pyrosequence
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 11x Sanger; 29x 454
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Soil sample from Nassau Bahamas
Isolation Country :: Bahamas
Latitude :: 25.066127
Longitude :: -77.339025
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
##Metadata-END##
FEATURES Qualifiers
source /organism="Stackebrandtia nassauensis DSM 44728"
/mol_type="genomic DNA"
/strain="DSM 44728"
/isolation_source="soil"
/culture_collection="DSM:44728"
/type_material="type strain of Stackebrandtia nassauensis"
/db_xref="taxon:446470"
/country="Bahamas: Nassau"
protein /locus_tag="Snas_1064"
/inference="protein motif:PFAM:PF00211"
/note="PFAM: adenylyl cyclase class-3/4/guanylyl cyclase;
Tetratricopeptide TPR_4; SMART: adenylyl cyclase
class-3/4/guanylyl cyclase; Tetratricopeptide domain
protein; KEGG: rec:RHECIAT_CH0002196 putative
adenylate/guanylate cyclase protein"
/transl_table=11
/db_xref="InterPro:IPR001054"
/db_xref="InterPro:IPR011717"
/db_xref="InterPro:IPR013026"
BEGIN
1 MSCPFCGIAA VVPGARYCHN CGGPLSPVAS LPVTERRVVT VLFCDLSDFT AWSEGQDPER
61 VGAVTDRVLA ECAQAVTEYG GHVDKLTGDG LMAVFGAPVA HDDDAERAVR AAQRMRRAVR
121 KLLKTESGGG VPMGLRVGLR TGLVVAGVQA SVEYTVVGDT VNTAARLADV AEVGTVYASV
181 ETVRATKHVA AWRHLNPVRL KGKRDPVEVY ELLGLHDEPG IRAGLGDRAP FVGRAPEMGR
241 VAGRLDAAIN RGEPISLVMT GEPGIGKTRM ALESARLATS RGARVLSVRA AAYGQGYRLG
301 PLADLIRKAI GLSIGDDRAT AERQLRKIVE RHNASDHHDS CVLNVDLLLA VLGYGPAPRT
361 QGRPGAEETA PGSDAISAAA ADLFNLLARE TPLVLILDDL HAATVQALDF LGATVAALSG
421 PILVIMFGRP SLVRTAGVLT RVSEAEAYTL TPLRGSDAAR LLSAFCDNGK VDPEDESRLL
481 ATAQGNPYYL SELVTLLTEH GMLTEHNGVW ELAPGSLTGR LLSADLAKVL TARIDALPPE
541 SRQLLREASV IGDVIPAAAL EVLDSETTGD LDKALEALLS RRMLRRRTHG GYRFVTPLMR
601 EAAYAGLGKA DLAGRHARLA RWASETTALD GGQADQFAIT HARRSVALSQ AMTLSASPDV
661 VDIGVAACGR AAGRAMDAAE PENALSLLEQ SADLKPLSPA DQLVRARALL RLGRTDDTLD
721 ALTDVATQVG LAVPLDAIPC DDPVAALTGP LADVGAATAD TTAAERSLAA AEAQAVGQPS
781 AEAADRPLAE AARSGSLGTE RSLADAVGQP SAEARAAAQL SVAEGGDPTG QSDTAVKFPV
841 EAARTLLVAG RAYRAEGEPD KAARVWSRAF TVARSAGLST EQCDALCRLG MFDYLGGRMR
901 RAEERFTTAL RVATEGGDRR AQAWALQHLA WVLTSVGDFT AADDALGRAL RLFALQKDRL
961 GRAWVRSSAA FTRLLAGRLR EAQRLAEAFR PFGEKVGDAW AVGLLRGISA YAAADLGELA
1021 EADTLARKAF REFDRIADDW GRGFTLVVRG AIARDLGELE HAMELVDEAE LYATKAAHPL
1081 LTGMARVLRG YCLLGLGDFA AAEACARESL SLARPHDVLE PVKVGPLALL AESRAAQGDT
1141 DGALRWLAEI AAHADDPALL YSRRRAVARY AQLLWRAGRA EEARHWALRA QDAPGEDANS
1201 ERLVRQVIDE TGASQGSSET TLAVST
//