LOCUS ADD40509.1 1001 aa PRT BCT 08-JAN-2015 DEFINITION Stackebrandtia nassauensis DSM 44728 transcriptional regulator, SARP family protein. ACCESSION CP001778-786 PROTEIN_ID ADD40509.1 SOURCE Stackebrandtia nassauensis DSM 44728 ORGANISM Stackebrandtia nassauensis DSM 44728 Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia. REFERENCE 1 (bases 1 to 6841557) AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S., Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P. TITLE Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21T) JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009) PUBMED 21304662 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6841557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Stackebrandtia nassauensis DSM 44728 JOURNAL Unpublished REFERENCE 3 (bases 1 to 6841557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082381 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM 44728 Culture Collection ID :: DSM 44728 GOLD Stamp ID :: Gc01107 Funding Program :: DOE-GEBA 2007 Number of Reads :: 81931 Sanger, 851638 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11x Sanger; 29x 454 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Soil sample from Nassau Bahamas Isolation Country :: Bahamas Latitude :: 25.066127 Longitude :: -77.339025 Oxygen Requirement :: Aerobe Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 28C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## FEATURES Qualifiers source /organism="Stackebrandtia nassauensis DSM 44728" /mol_type="genomic DNA" /strain="DSM 44728" /isolation_source="soil" /culture_collection="DSM:44728" /type_material="type strain of Stackebrandtia nassauensis" /db_xref="taxon:446470" /country="Bahamas: Nassau" protein /locus_tag="Snas_0797" /inference="protein motif:PFAM:PF03704" /note="PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; NB-ARC domain protein; transcriptional regulator domain protein; KEGG: scl:sce8759 hypothetical protein" /transl_table=11 /db_xref="InterPro:IPR001867" /db_xref="InterPro:IPR002182" /db_xref="InterPro:IPR005158" /db_xref="InterPro:IPR011717" BEGIN 1 MEFRILGAPE VIRDGAPLAI RGRIAPRLLA VLALEAGHVV PISTLVEALW EDPPVTARRQ 61 VQNTVSALRA VLGERTVEAV AEGYRLAVPA ETVDAGRFAA GVRRARQLRE DGDPVAALER 121 LREALALWRG HALAGMGGQV LERGARRLGE DRLAAFEERV ELELELGQRV PVGELRQLLT 181 ENPYRQRLAA LLMLALYREG RAPEALEVHT RMRQRLSRDL GVEPGPALRE RYAAILREDP 241 ELDVTGTPAP ASRGATRPEF APAQLPAALA GFTGRTSQLR ALDALGDDSV LATITGCGGS 301 GKTALAVHWA HRNRDRFPDG QLYLNLRGFD ADAPLSPQDA LTRLLPALGQ PADAVPAELD 361 AAAALFRSLL TGRRMLLLLD NARDAAQVEP LLPNEPGTVT LVTSRHRLTE LAAHGATAIS 421 LDTLDETDAL ALLSTLVPDD RLAEDPAATA ELVSRCGGLP LALRIVGANL AGRPYSTVAE 481 FAAEHSGSDR LGLLTVDGDP NATVATVFER SARALDEDTR RLFLRLGLIP GDEIPEDLSR 541 GTADLSETVN RELLGRLESA HLIERHRPGL YRFHDLVRLY ARQQAESTLD PAEAAEARTA 601 AIDWYASSFE QVSADPGNVI AAFKAWQDHP DAWRLARMLP DFLRYGHSLA GLRPHVETGL 661 ALAKDSGDAG ALSQMYDAMA FVHSNSGDHL TALTCGRKAV AIARGLPDGD ADGRLRSGLA 721 ALLLFNSYYE ESAALSRETL AIAEADGDIG RIFHDRIFLG AAYRSSGRFA DAETCFVQAM 781 RLADTCDDDD PRRVTARFKL ARLYNDMDRV EAAWPLLEAI GQWWQRTGSD FIRERVLWLR 841 GQLQLRSGRV EAAEQDLADS WELSHRNGIL VWAWYARFAQ IELCCQLGDH ERGLAYVEEL 901 AESGADTFER DDRAQWAALS AKVHIGLGDY RAAIAAAEQA RTVFTVTKNP LRLARCLVTL 961 AEAHERLGDT ETAERHRDEA RRGFAALGLS EKATRIGMST G //