LOCUS ADD40233.1 763 aa PRT BCT 08-JAN-2015
DEFINITION Stackebrandtia nassauensis DSM 44728 DEAD/DEAH box helicase
domain protein protein.
ACCESSION CP001778-510
PROTEIN_ID ADD40233.1
SOURCE Stackebrandtia nassauensis DSM 44728
ORGANISM Stackebrandtia nassauensis DSM 44728
Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae;
Stackebrandtia.
REFERENCE 1 (bases 1 to 6841557)
AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina
Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S.,
Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Stackebrandtia nassauensis type strain
(LLR-40K-21T)
JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009)
PUBMED 21304662
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Stackebrandtia nassauensis DSM 44728
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082381
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM
44728
Culture Collection ID :: DSM 44728
GOLD Stamp ID :: Gc01107
Funding Program :: DOE-GEBA 2007
Number of Reads :: 81931 Sanger, 851638 pyrosequence
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 11x Sanger; 29x 454
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Soil sample from Nassau Bahamas
Isolation Country :: Bahamas
Latitude :: 25.066127
Longitude :: -77.339025
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
##Metadata-END##
FEATURES Qualifiers
source /organism="Stackebrandtia nassauensis DSM 44728"
/mol_type="genomic DNA"
/strain="DSM 44728"
/isolation_source="soil"
/culture_collection="DSM:44728"
/type_material="type strain of Stackebrandtia nassauensis"
/db_xref="taxon:446470"
/country="Bahamas: Nassau"
protein /locus_tag="Snas_0518"
/inference="protein motif:PFAM:PF00270"
/note="PFAM: DEAD/DEAH box helicase domain protein;
helicase domain protein; SMART: DEAD-like helicase;
helicase domain protein; KEGG: dvu:DVU0256 DEAD-box ATP
dependent DNA helicase"
/transl_table=11
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
BEGIN
1 MSLAPEDLVR RLAVYRDGEP LRHVHAVPAR VAEFADWPDW VPAELRESLA AAGIERPWRH
61 QIEAARRVHD GKHTVIATGT ASGKSLAYQL PVLSALATDE GACALYLSPT KALAADQARS
121 VKKLASPGCV AATLDGDTPY EQRQWIGRHA NLILTNPDML HHAILPRHDR WARLLRQLRY
181 IVVDECHAYR GVFGSHVALV LRRLARLARH HGADPVFVAA SATTGDPAHG ASRLLGVEVE
241 AVTEDHSPHP GVTFGLWEPP LLPDVTGEHD APVRKSALTE TSQLLADLVS RQVRTVAFVR
301 SRRGVELVSS LARESLAGTG RSSRVAAYRS GYLREDRRAL ENDLRDGLLL GVAATNALEL
361 GIDIAGLDAI LLCGYPGTLA SLWQQSGRAG RGDIPALAIL VARDDPLDTY LVHHPEAVFS
421 RPVEATVLDP ANPYILGPHL LCAAYEHRLS PTDVDLFGGE IAEELLGEFA AAKIVRHRKT
481 GWFYVARDRP EVGLRGGVGT PIDVIDTESG ELLGTVDTAS AHTLVHPGAV YLHQGSSYLV
541 ESLDEEDSAA FVTSVRPEWS TYPRDTTDLR ILKLRRYVDA GPIGLCFGDV EVTNQVVGYQ
601 RRKLPGGEFM DEVPLALPPR TLRTVAVWWT ISENAILDTG LSKTDIPGAL HAAEHAAIGL
661 LPLVATCDRW DIGGLSTAGH PDTGVPTVFV YDGHHGGAGF AERGYTAWRD WLSATRDAIE
721 ACGCEFGCPS CVQSPKCGNG NDPLDKAGAL KVLELILAAE PRH
//