LOCUS ACV56669.1 1122 aa PRT BCT 11-DEC-2013
DEFINITION Eggerthella lenta DSM 2243 single-stranded-DNA-specific
exonuclease RecJ protein.
ACCESSION CP001726-2674
PROTEIN_ID ACV56669.1
SOURCE Eggerthella lenta DSM 2243
ORGANISM Eggerthella lenta DSM 2243
Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales;
Eggerthellaceae; Eggerthella.
REFERENCE 1 (bases 1 to 3632260)
AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T.,
Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M.,
Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L.,
Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A.,
Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C.
TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI
0255)
JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009)
PUBMED 21304654
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Eggerthella lenta DSM 2243
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082980
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243
Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979
GOLD Stamp ID :: Gc01054
Funding Program :: DOE-GEBA 2007
Number of Reads :: 39464-Sanger, 471609-454
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 10.2x Sanger; 25.3x 454
Gene Calling Method :: Prodigal
Isolation Site :: Rectal tumor
Collection Date :: 1938
Host Name :: Homo sapiens
Host Health :: Patient with rectal tumor
Body Sample Site :: Blood
Oxygen Requirement :: Anaerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: Bacteremia
Habitat :: Blood, Host, Human intestinal microflora
Phenotypes :: Pathogen
##Metadata-END##
FEATURES Qualifiers
source /organism="Eggerthella lenta DSM 2243"
/mol_type="genomic DNA"
/strain="DSM 2243"
/culture_collection="DSM:2243"
/type_material="type strain of Eggerthella lenta"
/db_xref="taxon:479437"
protein /locus_tag="Elen_2721"
/inference="protein motif:TFAM:TIGR00644"
/note="KEGG: bce:BC4403 single-stranded-DNA-specific
exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific
exonuclease RecJ; PFAM: phosphoesterase RecJ domain
protein; helicase domain protein; DEAD/DEAH box helicase
domain protein; phosphoesterase DHHA1; SMART: helicase
domain protein; DEAD-like helicase"
/transl_table=11
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR001667"
/db_xref="InterPro:IPR003156"
/db_xref="InterPro:IPR004610"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
BEGIN
1 MSAQFKIKAA DPASVVRLER ELGLPRFIAA TLVARGIDNP AAVHRFLAPS LERDWLDPYI
61 IPGLSDVADA LEAAVKRGDH ILVFGDFDLD GISATTVLTR GLRALGAQAT PFIPLRFEEG
121 YALSQAAITR ACSFGPDFIV TVDCGIACKA EAAAVVEAGL GLAITDHHEP VDLVPEGVPV
181 ADPKCDANCP SSILAGVGVA LKLVQVLGGR LGQPHLWRDF TDFATLGTVA DLMPMRDENR
241 ALVSDGIARM NAAPRPCIAA LLATSGAADK PVSATNLSFS VIPRLNAAGR MGDAQLALDL
301 LMTDDFEEAN RLATKLESVN DQRRAIEAEL SEIAKAQAAE IYHGQRALVV SGESWHEGVK
361 GIVASRLVNT YGVPSLLFTI DGDEARGSGR SVGQVSLFSA VESASDLLTR FGGHDAAVGV
421 TLPADKLPEF ERRLCAYMDA LPEGAFHPLV EIDSCVSLDE LTLDNVAQLD KLAPFGQEHP
481 VPVYLARDVM LANCRAVGAE KNHFSCSLSD GRATVSGIMF HCSDIESLMR TDSVVNAAFE
541 VQIDEWRGRK SVKAMLQSLA PARTCGALEA CLNPENLSFV ADLYATSDAE LCANAPHRPE
601 DVEAYEAARA ANRACWERKA AEDPAALEQA VVRAIIGDKP LHDAQREILA HLRAGRSTLG
661 IMATGRGKSL TFQVHAAERA LANHEASLFV YPLRALIADQ AFHLREALDA FGIGVITLTG
721 ESTPDERRQG FAGLADGTYD IVLTTPEFLA WHADEFAAAG RVRFVVVDEA HHIGLAKAGQ
781 RVAYATIGAA IAKLAGPGGE APAVLALTAT ADDEVAAAIK RELPVDACVY DPASRPNLEV
841 DDQRNLKNRD DYLANLIASG GKTVIYVNSR EQSVAVARAL RKRVPQLAPL IGFYNAGLAR
901 AERKRIEELF RTDALSVLVA TSAFGEGVDI PNIRHVVLYH LPFNEIEFNQ MSGRAGRDGK
961 PAGIHLLFNR GDCSLNERIL RDMTPDHDCL AQVYRRLRSL QREMGECFFT MGNADLAAAA
1021 STDAFPISPA SAACGVAVFR ELGLIETHTA FGADGMARSI HVVETQDKVE LTDSVRYREG
1081 LGEREVFHAF RDWAMKSDSA TLHIRVSRPI LPGDAAGDAR ER
//