LOCUS ACV54901.1 1060 aa PRT BCT 11-DEC-2013 DEFINITION Eggerthella lenta DSM 2243 type III restriction protein res subunit protein. ACCESSION CP001726-906 PROTEIN_ID ACV54901.1 SOURCE Eggerthella lenta DSM 2243 ORGANISM Eggerthella lenta DSM 2243 Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella. REFERENCE 1 (bases 1 to 3632260) AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T., Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L., Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C. TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255) JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009) PUBMED 21304654 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3632260) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Eggerthella lenta DSM 2243 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3632260) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082980 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243 Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979 GOLD Stamp ID :: Gc01054 Funding Program :: DOE-GEBA 2007 Number of Reads :: 39464-Sanger, 471609-454 Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 10.2x Sanger; 25.3x 454 Gene Calling Method :: Prodigal Isolation Site :: Rectal tumor Collection Date :: 1938 Host Name :: Homo sapiens Host Health :: Patient with rectal tumor Body Sample Site :: Blood Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: Bacteremia Habitat :: Blood, Host, Human intestinal microflora Phenotypes :: Pathogen ##Metadata-END## FEATURES Qualifiers source /organism="Eggerthella lenta DSM 2243" /mol_type="genomic DNA" /strain="DSM 2243" /culture_collection="DSM:2243" /type_material="type strain of Eggerthella lenta" /db_xref="taxon:479437" protein /locus_tag="Elen_0929" /inference="protein motif:PFAM:PF04851" /note="PFAM: type III restriction protein res subunit; KEGG: mes:Meso_0544 type III restriction enzyme, res subunit" /transl_table=11 /db_xref="InterPro:IPR006935" BEGIN 1 MKFKFKVQRY QTDAADAVTS VFEGQPNQGA SVYLRDLGRK PKCAQGEIDF GDESTEGYAN 61 APVALSGADI LANVRAVQRR NQIPESEELF CSMGACQLDV EMETGTGKTY VYTKTMLELN 121 RLYGWCKFIV VVPSVAIREG VAKSLENTQE HFFSQYHKKI RFFIYDSDNL TELDAYSQSS 181 DVNCMVINMQ AFNASMKEGA KNKAARIIFD ERDEFSSRRP IDVIAANRPI VICDEPQKMG 241 KKGGATQKGI ARFNPLFVLN YSATHKEKHD LVYALDALDA YNQKLVKRIE VKGFALKNMR 301 GTDGYLYLRD IVVSKNRAPE AVIEFKCMGS GGKVRKKTAR FGEGDSIYGA SGSTKLEAYR 361 GYTIASGNDG VVPPQDGRPG YVRFLDGSIG DDGRVYIGEV YGDSAADDMQ RIQIRETILS 421 HLQKEEALFR RGIKCLSLFF IDQVAKYRDL SGNGETVGYG KIFEEEYEAI VSDRLEHPTQ 481 DDILDPSYAE YLGRFEACSV HSGYFSVDKK GNAVESKAER KAERDDGIGI NDDDAKRGYD 541 LILRDKERLL SFDEPVRFIF SHSALREGWD NPNIFQICTL KESGSETSKR QEVGRGMRLA 601 VDQDGNRQDA ALLGPDEVHR VNLLTVIASE SYETFVRDLQ TDISKSLRDR PKKVEMDLFS 661 GRDVVLDGET VSFTEDESRR VYKTLYKCDL IDDDDKPTAE FRKAVEDGTF VEYFVAKLPE 721 EIADAAHAKA VEALVKSVYD AHALDGMIGR AQEKISENTL TDNFARREFK ELWARINRKH 781 AYTVSFSDDE LRRKSIERIN CDLRVSRLQY TLTVGGQKSR ATRDEVQGGS SFGRTQTETR 841 NVDAGTASVG VTYDLVGEVA QAAAITRRSA AAILAGIDAN VFGLYRVNPE EFIKKTAALI 901 VSEKATMVVE HISYHEIDDV YDEAIFTERM PDNASKAYEA KKNIQRFVFP DSDGERRFAE 961 DMDAAAEVAV YAKLPRTFQI PTPVGNYAPD WAIAFKEGSV RHVFFVAETK GTVDTLELSG 1021 VENAKIACAK KLFNEMSTGD VRYHNVATYE DLLEVMGRMG //