LOCUS ACV54714.1 997 aa PRT BCT 11-DEC-2013 DEFINITION Eggerthella lenta DSM 2243 diguanylate cyclase/phosphodiesterase with extracellular sensor protein. ACCESSION CP001726-719 PROTEIN_ID ACV54714.1 SOURCE Eggerthella lenta DSM 2243 ORGANISM Eggerthella lenta DSM 2243 Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella. REFERENCE 1 (bases 1 to 3632260) AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T., Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L., Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C. TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255) JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009) PUBMED 21304654 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3632260) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Eggerthella lenta DSM 2243 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3632260) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082980 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243 Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979 GOLD Stamp ID :: Gc01054 Funding Program :: DOE-GEBA 2007 Number of Reads :: 39464-Sanger, 471609-454 Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 10.2x Sanger; 25.3x 454 Gene Calling Method :: Prodigal Isolation Site :: Rectal tumor Collection Date :: 1938 Host Name :: Homo sapiens Host Health :: Patient with rectal tumor Body Sample Site :: Blood Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: Bacteremia Habitat :: Blood, Host, Human intestinal microflora Phenotypes :: Pathogen ##Metadata-END## FEATURES Qualifiers source /organism="Eggerthella lenta DSM 2243" /mol_type="genomic DNA" /strain="DSM 2243" /culture_collection="DSM:2243" /type_material="type strain of Eggerthella lenta" /db_xref="taxon:479437" protein /locus_tag="Elen_0735" /inference="protein motif:TFAM:TIGR00254" /note="KEGG: bja:blr2589 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; EAL domain protein" /transl_table=11 /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR003660" BEGIN 1 MPFCVALGIQ GVVCATVLAR SEILKQMEID AYDLFSERVA SRAGYLENDM IFRWSDFDPV 61 VESATASIDK ALAAAQATSA DIETGSDLAI SIIEATSQDL LAYSHRAEVD GVFLVLADGA 121 EGQSDNRTAL YIRDSNPKVE VANGSDLMLA ACPISIGRQL GVTLDSMWSA TFPLAAEGES 181 RSAFYYEPVR AAERYPEAST NDLGYWGRPV DFGWAGTPSI TYSKPIRDAQ GGIVGVIGVE 241 VRLDRVASFF PYRDLASSGN GSYVLAITNE DGGFVRDGGV APLPDKERVY EALTTTGASQ 301 SLYLKESAFS ASIDGAGRMV VDPADDASSD ARAVASAAEI QLYDSTSPFA YEHWALVGLE 361 REGEMFSASK TLSDNLTAVF AASLVVGLLI AVVAAWLSSS RLRHLMSEVR AAQPEQPIAF 421 TPTGIVEVDE LSEAIESMGE EVAMTASRLS RILRLSDRGI GAFEYSYETD AITFTDGFFA 481 TLSTLEPPDP SYFDPQRIAT GSLSASEFES LMKWYVPYIE VEEEGRYLFT GPHRTSWVRL 541 VVVESGEHNR VLGLVEDVTH EIETRRRIEH ERDHDILTGL FNRRAFEQEV TDLLAQRPPA 601 LGAMLMLDLD NLKFINDIYG HDWGDQYIKA AGRVVDEAFR DKGFYSRISG DEFLVFVDVC 661 PDRASVEDLF ATFRAMLDAS SIVAPDGKTL KVRASMGAAF YPEDATDFAH LREYADFAMY 721 LAKSSRKGDL FSFDRQSYEE KSFIVNNKED LNRLLEEGLV EYHFQPIVDL RAGEPVAYEA 781 LMRSQLDTIP TPDQVLALAR SQSKLYRVEH LTFFGALEAF SRYPEAHGAT LFVNSIATQR 841 LSSDDELVLN ERYPDLLKRL VIEITESDYS REMALYKEAL ARRFGARLAI DDFGSGNNGE 901 TSLLDYHVDF VKIDMEIVRD IDVAKDHQDI ARNLIGYAHD RSIRVIAEGV ETEAELRALR 961 ELGADYVQGY LTGRPAPEPR DVDDEVKRLI RSLNDAR //