LOCUS ACV54183.1 1435 aa PRT BCT 11-DEC-2013
DEFINITION Eggerthella lenta DSM 2243 diguanylate cyclase/phosphodiesterase
with PAS/PAC sensor(s) protein.
ACCESSION CP001726-188
PROTEIN_ID ACV54183.1
SOURCE Eggerthella lenta DSM 2243
ORGANISM Eggerthella lenta DSM 2243
Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales;
Eggerthellaceae; Eggerthella.
REFERENCE 1 (bases 1 to 3632260)
AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T.,
Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M.,
Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L.,
Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A.,
Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C.
TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI
0255)
JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009)
PUBMED 21304654
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Eggerthella lenta DSM 2243
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082980
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243
Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979
GOLD Stamp ID :: Gc01054
Funding Program :: DOE-GEBA 2007
Number of Reads :: 39464-Sanger, 471609-454
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 10.2x Sanger; 25.3x 454
Gene Calling Method :: Prodigal
Isolation Site :: Rectal tumor
Collection Date :: 1938
Host Name :: Homo sapiens
Host Health :: Patient with rectal tumor
Body Sample Site :: Blood
Oxygen Requirement :: Anaerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: Bacteremia
Habitat :: Blood, Host, Human intestinal microflora
Phenotypes :: Pathogen
##Metadata-END##
FEATURES Qualifiers
source /organism="Eggerthella lenta DSM 2243"
/mol_type="genomic DNA"
/strain="DSM 2243"
/culture_collection="DSM:2243"
/type_material="type strain of Eggerthella lenta"
/db_xref="taxon:479437"
protein /locus_tag="Elen_0189"
/inference="protein motif:TFAM:TIGR00254"
/note="KEGG: dds:Ddes_2284 diguanylate
cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase;
PAS sensor protein; PFAM: EAL domain protein; PAS fold-3
domain protein; GGDEF domain containing protein; SMART:
EAL domain protein; GGDEF domain containing protein; PAC
repeat-containing protein; PAS domain containing protein"
/transl_table=11
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000160"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR001610"
/db_xref="InterPro:IPR001633"
/db_xref="InterPro:IPR013655"
BEGIN
1 MLMEAMFGEV ETLAYVIDSE CRVVYFNKKM EVAFPHLETG MLCYQVLRGE PASCPDCPLI
61 LDHASKSRVY NQRIRSWIET EVSDIDWPGS GACHIFLSRV IDRPDLGAAD PKPFDALTGL
121 YTREAFFSAV STAIQAYPER SYCLMAVDIE HFKLFNEWYG EEAGDLFLEE VGRLLGEAAA
181 ESGGVSGYLS GDDFCMLLPC DEGMIETLRA RITQSALHHG KGMGFLPAFG LFRIDDRSLP
241 VGIMYDRALL ALASVKGNYA QRFRWYDDGM LREIKDDHSL LLEVQQALEK GEITFYAQPK
301 CNLDTGKIVG LEALVRWMHP ERGLIPPIQF IPMLERNGLI TALDLHIWEE VFRALRAWVD
361 AGQAPVPISV NVSRRDLYAL DVLGTFEGLI EKYDIPPRLL AVEITESAYV EDCELIVDIV
421 EGFHDLGISV HMDDFGSGYS SLGMLKDVNV DVLKLDMKLL DAIDAQSRKA RSILEAIIGM
481 ANLLDIRVIA EGVETESQRQ LLVKMGCLYG QGYFFYKPMP KAEFEPLIAN RTKVDFRGIH
541 ADSIERFRIR DLIESRVLSD AMLDDILGPL VLYDLYDGEV ELLSANEHYC QLNGVNAVDL
601 HELRSTFARR AFESDWDEVM EAFEQARENV PNGAVVVVRR MRPDGSTAHL LVHLLFLREH
661 EGHYLYLGSL RDVTRERQQA RQLESSRRAL SAATDASPRD PLLVALGEEN RRTALALSAE
721 LSPGGMIGGY CEPEFPLYFA NAAMVELLGY DTYEELAAGI DWRVGNTIHP DDLASVALDI
781 GPEYYVGLEY TTTYRMARKD GTWFWTLDKG RVVEAEDGRL AIVSACTDIT EVMAVQQQLA
841 ERNKLLISQN EELAFLNEDM PGGYHRCLDA PGCDFLYMSD RFLDMFGYTR EEIKELFDDK
901 YMLMVHPDDR DSVAKGVTAL REGTAGSDPL EYRMRAKDGW RWVIDQSRFL EYDDTSFLQG
961 VVVDVTETVE LRDMMSMLIE HTSSDIVLLS WSDKEDVRVN VVACGASKKY GLSPEQYEDI
1021 IRGQLYLPSG DGGGRLVDEI VDKIDRGESL AIVDRPRFPG RENVWMHIEA RRVGLESFER
1081 MALCLVTDVS SMKNQQQELW LTKRKLEGVL DQAGVQSWDW DINSNRLVLS RSELMDRIFA
1141 GLSRFEDDML VVDGFDPETM EFRFVPPDYQ QAFRDSFRGV RTARDRQRSV FEIPFTFEGE
1201 APLWIEVSCE TVRDEQDRPV RAVGYYLDMT DRRNESLQNK ANSEALRQLR KKSFQLLKMA
1261 KTDALTGLHN RQAAIPKIEE RLRAVEAGEL GDASCALIML DLDSFKLAND VFGHAYGDQV
1321 IVHVAEALKE SFPGDVVCRM GGDEFLVWCE DVDEGALEDR IASALRAMEV ERVEDGRTFL
1381 FSASAGYVLV PQEGFSFDDL YQKADSALFS VKMDGKRSCS RFWSGMKTVR CELAE
//