LOCUS ACV54098.1 2099 aa PRT BCT 11-DEC-2013
DEFINITION Eggerthella lenta DSM 2243 cell wall/surface repeat protein
protein.
ACCESSION CP001726-103
PROTEIN_ID ACV54098.1
SOURCE Eggerthella lenta DSM 2243
ORGANISM Eggerthella lenta DSM 2243
Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales;
Eggerthellaceae; Eggerthella.
REFERENCE 1 (bases 1 to 3632260)
AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T.,
Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M.,
Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L.,
Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A.,
Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C.
TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI
0255)
JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009)
PUBMED 21304654
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Eggerthella lenta DSM 2243
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082980
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243
Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979
GOLD Stamp ID :: Gc01054
Funding Program :: DOE-GEBA 2007
Number of Reads :: 39464-Sanger, 471609-454
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 10.2x Sanger; 25.3x 454
Gene Calling Method :: Prodigal
Isolation Site :: Rectal tumor
Collection Date :: 1938
Host Name :: Homo sapiens
Host Health :: Patient with rectal tumor
Body Sample Site :: Blood
Oxygen Requirement :: Anaerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: Bacteremia
Habitat :: Blood, Host, Human intestinal microflora
Phenotypes :: Pathogen
##Metadata-END##
FEATURES Qualifiers
source /organism="Eggerthella lenta DSM 2243"
/mol_type="genomic DNA"
/strain="DSM 2243"
/culture_collection="DSM:2243"
/type_material="type strain of Eggerthella lenta"
/db_xref="taxon:479437"
protein /locus_tag="Elen_0104"
/inference="protein motif:TFAM:TIGR02543"
/note="TIGRFAM: cell wall/surface repeat protein; KEGG:
mmw:Mmwyl1_0481 filamentous haemagglutinin outer membrane
protein"
/transl_table=11
/db_xref="InterPro:IPR013378"
BEGIN
1 MLEKMLDLKN TFEGKFLAVL MSVVLVMSMT NILAFAGNEG QKDGSKTESA PTDQVVGESD
61 KEAVDEAVQH GESAAAKDAD ASKTTPSQPL VSTTVDEAVV TFETQNAFVS VKDQLLSGTM
121 LTTELHKELR FTASADTGFE LGAITAKNAA NADVPVTTQD GVSSIAAEYV DSTLVVSVVA
181 AAVVSDEPEV ETTPITSDTK IEPGEADEKG EPEEPKSEEP ETDEPEAPVA DEDVVEVEAD
241 VSNPAFEGYA QAGNVLVKVT AAEGVLPEGA TVQATRIERQ DVVDAVAERV ESQGKVLEDA
301 IAIDVTLLDK DGNEIQPNGA LNVCFFDANV EGEEVGVYRV SDDASQVETI GARQADPAVQ
361 SFDVDHFTIY VATGSNYAST GIKLDSSSIE VGETIKALGE RKWNSKGYSW TSSDASVAKV
421 AFSKENRADI VGVSPGVATI TYSYKVGNRT YTDTAKVHVV PSVVKHTVSW YVNGDVSKST
481 KVRDGEVPSY GGTPNRAGDW QYKQFVGWAT APNSKNYLTE GELPAVTEDV SYYAVFTSQA
541 YFYFVLEGRS NTSTVAKDYM YAGEGTMIVP DGFNSGDRWY DGSNFSIADY IVSTPSDEAI
601 RNGIRAAYAD YSPDWTYTID WTTLSVAGSS VDYRYNTFDY GKSMHTDGAL SINKDTTIGV
661 TYLTQKPDGS VVTNSTSHDK NVAFGLNSTV NTDAPSFETD GYTYNSRVNH NGASYVFDGW
721 YLDQSYTTKA PDSVSPSSSA SFYARYIANT KTLTYQANGG AFSDGTIQDK TAVQQVGARV
781 SFISNPSRDG YVFTGWKDKD TGDVYSAGVS GMIMPDRDVT LVAQWQGVIP IKLLGDETKK
841 TYSGTKQSYT GFTVSGLDMG SYTVSGVQAL AQGTDVGTYK GTIDYSGMRI FEKSSGSDVT
901 NQFEVVEASE PTLIVEKAPI SIVTPDDSKL YDGAPLIATK GAELSGLVND ETATLIVIGS
961 RTDVGTSDNA YQIDWSGSAK ESNYFIDEET IGTLEIAKRP VTVTAKGGEK QYDGKPLTAA
1021 DTGYDIGGEG LVEGHEADVA LSGSQTAPGA SPATVESVAV KDGDVDVANN YDVATADGSL
1081 KVTNRDAKYE VTLKANSSTG NVYDGTEKSA KGVVTDRFVI DDVEYAVSGY ETQDPAEVAA
1141 GVYTNNVSGD FKVKDPAGND VTSEFAVHTE DGELEIAKRP VTVTAKGGEK QYDGKPLTAA
1201 DTGYDIGGEG LVEGHEADVA LSGSQTAPGA SPATVESVAV KDGDVDVANN YDVATADGSL
1261 KVTNRDAKYE VTLKANSSTG NVYDGTEKSA KGVVTDRFVI DDVEYAVSGY ETQDPAEVAA
1321 GVYTNNVSGD FKVKDPAGND VTSEFAVHTE DGELEIAKRP VTVTAKGGEK QYDGKPLTAA
1381 DTGYDIGGEG LVEGHEADVA LSGSQTAPGA SPATVESVAV KDGDVDVANN YDVATADGSL
1441 KVTNRDAKYE VTLKANSSTG NVYDGTEKSA KGVVTDRFVI DDVEYAVSGY ETQDPAEVAA
1501 GVYTNNVSGD FKVKDPAGND VTSEFAVHTE DGELEILPRE VTLASGSATK IYDGTALELP
1561 DVTVGGDGFV GTEASVRATG SITDIGGPID NTIVVEPGEG FIAANYNVVY TVGKLTVTSA
1621 SIDPDDPSYT GIQINNPYDV QYNGQEQRWI PSVFDRNNHK LVTGTDYTVS YSQDVRNVGV
1681 VTVTITGIGN YMGTVERAYN ITPAPAVIRV NDSSKAYGEA DPGFTGAVEG LFGDDLLGDI
1741 AYSRTNIDEE VGNYSDVLTA TVGNLNGNYT YTVEPGNFSI VPAGGNVVTI DATGLTKTYD
1801 GQPVSVVAEA SVDGSALLYS VDGSTWSDAN PEFTNAGTYT VYVKATHDGY EESAPVSATV
1861 VINPAPVTIA VADASKVAGA DDPAFSGTVE GLVAEGDLGD INYVRPGGEE AAGVYVGALT
1921 ALYTQNGNYR VAVLNGTFTI TAAPVTPPTP PTPPTSPTPT PLPTPGTVPP DSPIAPVVTP
1981 IVDALQGAAE AVIGDNETPL AEPRETEIGD NDTPLASHDH ASCWVHWYII LGIIVTALYG
2041 ACVALRRGLF SRKLKKYEDG LTGGGDPAPG APSIGDDASA PIAPKGAPAG ATLAAGLGE
//