LOCUS ACV54002.1 932 aa PRT BCT 11-DEC-2013 DEFINITION Eggerthella lenta DSM 2243 DNA gyrase, A subunit protein. ACCESSION CP001726-7 PROTEIN_ID ACV54002.1 SOURCE Eggerthella lenta DSM 2243 ORGANISM Eggerthella lenta DSM 2243 Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella. REFERENCE 1 (bases 1 to 3632260) AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T., Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L., Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C. TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255) JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009) PUBMED 21304654 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3632260) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Eggerthella lenta DSM 2243 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3632260) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082980 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243 Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979 GOLD Stamp ID :: Gc01054 Funding Program :: DOE-GEBA 2007 Number of Reads :: 39464-Sanger, 471609-454 Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 10.2x Sanger; 25.3x 454 Gene Calling Method :: Prodigal Isolation Site :: Rectal tumor Collection Date :: 1938 Host Name :: Homo sapiens Host Health :: Patient with rectal tumor Body Sample Site :: Blood Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: Bacteremia Habitat :: Blood, Host, Human intestinal microflora Phenotypes :: Pathogen ##Metadata-END## FEATURES Qualifiers source /organism="Eggerthella lenta DSM 2243" /mol_type="genomic DNA" /strain="DSM 2243" /culture_collection="DSM:2243" /type_material="type strain of Eggerthella lenta" /db_xref="taxon:479437" protein /locus_tag="Elen_0007" /EC_number="5.99.1.3" /inference="protein motif:TFAM:TIGR01063" /note="KEGG: bcr:BCAH187_A0006 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A" /transl_table=11 /db_xref="InterPro:IPR002114" /db_xref="InterPro:IPR002205" /db_xref="InterPro:IPR005743" /db_xref="InterPro:IPR006691" BEGIN 1 MADNNDSFDE FLNRAEEDYD AGDIEAAEAG DEDDVLNDVE GGEDESRPGA FVSEENKARS 61 LIDMSSIANP HGSIVEGANG GEGTIVRSAY LGKEMQTSFL EYAMSVIVSR ALPDVRDGLK 121 PVHRRILYAM NESGYTPNRP HMKSARTVGD VIGKYHPHGD SAVYDTMVRL AQPFSMRVPL 181 VDGHGNFGSI DGDGAAAMRY TESRLDKVAM ELLRDLDKET VDFQPNYDES LEEPTVLPAR 241 FPNLLVNGSQ GIAVGMATNI PPHNLGETID ATCLMLDNPD VTTEELMKAL PGPDFPTGGI 301 IMGKKGIRDA YETGRGSLTV RAKCKVEEGK NGRSSIVVTE IPYQVNRQRL LEKLGELVRE 361 KKLPEISNIH DGADRHGIDI IIDLKKDAIP QVVLNKLYKH TQLQVGFGVI MLSLVDGAPR 421 VLSLKEMLHY YIAHQEEVIV RRTRYELAKA EERAHILEGL IIALDNIDEV IHIIRSSQTD 481 KEAAERMTER FGLTDKQTAA ILEMRLRRLT GLEHQKIEDE LKELLEKIAY FKRVLSDDQL 541 VHDIIKEELS EVKKKFGSPR RTLLSEAAKD LDVEDLIAEE SMVVTMTKAG YVKRLPVATY 601 RQQKRGGKGM SGVNLKDNDY VEHLFVASTH SYMLFFSTKG KVYRLKVYEL PEASRHARGT 661 AIVNLLPLEK GETISAVIAT KDFPSDEYLM FATEHGMVKK TSMDLYDRTR RDGLIAISLK 721 DNDRLISVKR VAPGEKVLMV SSAGKAIMWD EGEVRAMGRD TMGVRGMNVP PIAKVLGMEI 781 AQPDTDLFVI TEKGYGKRTP IAEYPEHHRG GQGVFTITMT EKKGLLAVMK IVAEDDEIMI 841 MSEEGVCVRT PVSGISELGR STQGVCVMKT ADKDRVTAVA ISSRGKKKKA SGAQVEGEEL 901 DENAIDELED GAEGTAEIES VEEAENAEGD EE //