LOCUS ACV54001.1 648 aa PRT BCT 11-DEC-2013
DEFINITION Eggerthella lenta DSM 2243 DNA gyrase, B subunit protein.
ACCESSION CP001726-6
PROTEIN_ID ACV54001.1
SOURCE Eggerthella lenta DSM 2243
ORGANISM Eggerthella lenta DSM 2243
Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales;
Eggerthellaceae; Eggerthella.
REFERENCE 1 (bases 1 to 3632260)
AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T.,
Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M.,
Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L.,
Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A.,
Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C.
TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI
0255)
JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009)
PUBMED 21304654
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Eggerthella lenta DSM 2243
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082980
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243
Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979
GOLD Stamp ID :: Gc01054
Funding Program :: DOE-GEBA 2007
Number of Reads :: 39464-Sanger, 471609-454
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 10.2x Sanger; 25.3x 454
Gene Calling Method :: Prodigal
Isolation Site :: Rectal tumor
Collection Date :: 1938
Host Name :: Homo sapiens
Host Health :: Patient with rectal tumor
Body Sample Site :: Blood
Oxygen Requirement :: Anaerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: Bacteremia
Habitat :: Blood, Host, Human intestinal microflora
Phenotypes :: Pathogen
##Metadata-END##
FEATURES Qualifiers
source /organism="Eggerthella lenta DSM 2243"
/mol_type="genomic DNA"
/strain="DSM 2243"
/culture_collection="DSM:2243"
/type_material="type strain of Eggerthella lenta"
/db_xref="taxon:479437"
protein /locus_tag="Elen_0006"
/inference="protein motif:TFAM:TIGR01059"
/note="KEGG: bha:BH0006 DNA gyrase subunit B; TIGRFAM: DNA
gyrase, B subunit; PFAM: DNA topoisomerase type IIA
subunit B region 2 domain protein; DNA gyrase subunit B
domain protein; TOPRIM domain protein; ATP-binding region
ATPase domain protein; SMART: DNA topoisomerase II;
ATP-binding region ATPase domain protein"
/transl_table=11
/db_xref="InterPro:IPR000565"
/db_xref="InterPro:IPR001241"
/db_xref="InterPro:IPR002288"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR011557"
/db_xref="InterPro:IPR013506"
BEGIN
1 MANKPDHYDG SDIQVLEGLE AVRKRPGMYI GSTGPRGLHH LVYEVVDNAV DEALAGYCDE
61 IKVWIHQDNS ISVDDNGRGI PIDKHPKEKI PTVEVVLTIL HAGGKFGGEG YKVSGGLHGV
121 GVSVVNALSS RVEVQVRKEG KEYFIGFDHG KTSEKLREVG PTKRGNGTTV SFWPDPEIFT
181 ETTVYDFDTL ANRFREMAFL NKGLKIVLYD ERVTDADGKP RTEVFQYAGG IVDFVKFLNE
241 GKETLNKPIY FEAENDDGTV EVAMQWSTSY STNSVMAFAN NINTHEGGTH LDGFKQAVTR
301 TINEYARSKG ILKEKDSNLS GDDTREGCAA IVSVKLHDPQ FEGQTKTKLG NTEIRPLVQN
361 AVTQGLAEYL EENPTPAKRI IGKATQALKA REAARKAREM TRRKGVLDSF ALPGKLADCS
421 SKTPENSELF IVEGDSAGGS AKQARDRKTQ AILPLRGKIL NVERAGLHRS LSSDTISSLI
481 TAIGTNIGDD FDADQSRYHR IIIMTDADVD GAHIRILLLT FFYRYMPELI NRGYIYIAQP
541 PIFGLKKKNS RSPKIERYIY DESSLGSVLA EYDDPNKFDV QRYKGLGEMD PDQLWETTME
601 PATRTLLQVS IDDAAEAERV VSDLMGDQVE PRKEFIQKHA RDVRFLDI
//