LOCUS ACU40865.1 934 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 leucyl-tRNA synthetase protein.
ACCESSION CP001630-6891
PROTEIN_ID ACU40865.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_7074"
/inference="protein motif:TFAM:TIGR00396"
/note="TIGRFAM: leucyl-tRNA synthetase; KEGG: rle:RL2798
putative leucyl-tRNA synthetase"
/transl_table=11
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002300"
/db_xref="InterPro:IPR002302"
/db_xref="InterPro:IPR013155"
/db_xref="InterPro:IPR015413"
BEGIN
1 MSTEPAADTP AYRYTAALAN EIEQRWQRRW EERGTFHAPN PSGQLKGEVP ADKLFVQDMF
61 PYPSGAGLHV GHPLGFIGTD VYARYHRMTG RNVLHTMGFD AFGLPAEQYA VRTGQHPRET
121 TKANIETYLR QIRRLGLGHD ERRRISTIDP DYYRWTQWIF LQIYNSWFDA DVKKARPIAE
181 LVERFKSGER ATPDGRPWAE LSAAEQQKVL GEHRLAYLSE APVNWCPGLG TVLANEEVTS
241 DGRSERGNFP VFRRNLRQWM MRITAYSDRL VDDLDRLDWP EKVKSMQRNW IGRSNGARVR
301 FEVRAGEGAV GADERIEVFT TRPDTLFGAT YVVLAPEHPL VDAIASPAQA GAIAAYRAEV
361 ARKSELDRQE SKEKTGVPIG AVAVNPVNGA ELPVYVADYV LMGYGTGAIM AVPGQDQRDW
421 DFAKAFDLPI IRTVQPTEGF EGEAFTGVGP AINSGFLDGM DVAEAKKAII AWLEERGAGE
481 GTVQYKLRDW LFSRQRYWGE PFPIVYDEDG TPIALPESHL PVVLPEVDDY SPRTFEPDDA
541 NSEPSPPLTR AQEWVEVELD LGDGPKRYRR ETNTMPNWAG SCWYQLRYVD PTEPGRFVDA
601 ENEQYWLGPR PAEHGANDPG GVDLYIGGVE HAVLHLLYSR FWQKVLFDLG HVSGDEPYRR
661 LFNQGYIEAY AYTDARGAYV TAEEVVEKDG KFFHDGAEVS REYGKMGKSL KNVVTPDEMC
721 ANYGADTFRV YEMSMGPMDV SRPWATKDVV GAQRFLQRLW RNLVDEDSGE LRVADVEPSE
781 DALRLLHKTI AGVHDDYANL RYNTAVAKLI ELNNHVTKHY PAGAPRALAG PVVQLLAPLA
841 PHVAEELWER LGGGGDSLAH GPFPVAEERY LVEDTVLYPV QVGGKVKARV TVSASASPDE
901 VKAAALGDPA VAALLTGEPR KVIVVPGRLV NIVL
//