LOCUS       ACU40667.1               720 aa    PRT              BCT 24-DEC-2013
DEFINITION  Actinosynnema mirum DSM 43827 diguanylate cyclase/phosphodiesterase 
            with PAS/PAC sensor(s) protein.
ACCESSION   CP001630-6693
PROTEIN_ID  ACU40667.1
SOURCE      Actinosynnema mirum DSM 43827
  ORGANISM  Actinosynnema mirum DSM 43827
            Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
            Actinosynnema.
REFERENCE   1  (bases 1 to 8248144)
  AUTHORS   Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
            Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
            Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
            Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
            Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
            Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
            Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
  TITLE     Complete genome sequence of Actinosynnema mirum type strain (101)
  JOURNAL   Stand Genomic Sci 1 (1), 46-53 (2009)
   PUBMED   21304636
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8248144)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
            Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
            Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
            Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     The complete genome of Actinosynnema mirum DSM 43827
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 8248144)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
            Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
            Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
            Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
            Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 4082379
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
                      David Bruce (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Finishing done by JGI-LANL
            Annotation by JGI-ORNL and JGI-PGF
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##Metadata-START##
            Organism Display Name :: Actinosynnema mirum 101, DSM 43827
            Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
            GOLD Stamp ID         :: Gc01024
            Funding Program       :: DOE-GEBA 2007
            Assembly Method       :: Newbler version 1.1.02.15, Phrap
            Sequencing Depth      :: 8.9x Sanger; 20x pyrosequence
            Gene Calling Method   :: Prodigal
            Isolation Site        :: "Blade of grass from Raritan River NJ,
                                     USA"
            Collection Date       :: September 1976
            Isolation Country     :: USA
            Latitude              :: 40.491816
            Longitude             :: -74.322087
            Oxygen Requirement    :: Aerobe
            Motility              :: Nonmotile
            Sporulation           :: Sporulating
            Temperature Range     :: Mesophile
            Temperature Optimum   :: 10-30C
            Gram Staining         :: gram+
            Biotic Relationship   :: Free living
            Diseases              :: None
            Habitat               :: Soil
            Phenotypes            :: Nocardicin A producer
            Energy Source         :: Chemoorganotroph
            ##Metadata-END##
FEATURES             Qualifiers
     source          /organism="Actinosynnema mirum DSM 43827"
                     /mol_type="genomic DNA"
                     /strain="DSM 43827"
                     /type_material="type strain of Actinosynnema mirum"
                     /db_xref="taxon:446462"
     protein         /locus_tag="Amir_6871"
                     /inference="protein motif:TFAM:TIGR00254"
                     /note="KEGG: gsu:GSU0474 sensory box/GGDEF family protein;
                     TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM:
                     EAL domain protein; PAS fold-3 domain protein; GGDEF
                     domain containing protein; PAS fold domain protein; PAS
                     fold-4 domain protein; SMART: EAL domain protein; GGDEF
                     domain containing protein; PAC repeat-containing protein;
                     PAS domain containing protein"
                     /transl_table=11
                     /db_xref="InterPro:IPR000014"
                     /db_xref="InterPro:IPR000160"
                     /db_xref="InterPro:IPR000700"
                     /db_xref="InterPro:IPR001610"
                     /db_xref="InterPro:IPR001633"
                     /db_xref="InterPro:IPR013655"
                     /db_xref="InterPro:IPR013656"
                     /db_xref="InterPro:IPR013767"
BEGIN
        1 MTERAGHLVA PSGRSHNTDP ALRAGAESFA RTWATAVIGS SYVPMTRSEV VEHLRALTEV
       61 LVTALLATPF RPAPGHEIGA RLVEAHFTGT DTLGRTVQLM GDDLCAELGI PADDSTRTRL
      121 AALQGALAAG YARALRERTL AEQEAIRAAV LDARDQAEAA LRASEARFRA MFTEAAIGIG
      181 IADVEGRILD VNQALQDMLG FGVEEMRQHN IRDLMHPEDG PSVWRLYDQL TAGERDHYRA
      241 EKRFRRADGE QVWTHLTLSL VRDDHGDPQY QVAMIEDVTD RHLLQNRLRY QALHDPLTGL
      301 PNRALFLDRL SRVFGNPDKH RAGLCYLDLD GFKVINDSLG HDIGDQLLVE VGRRLDRSVS
      361 GDGKLVARMG GDEFVILVED STRTDDIVAV ADRVLRELES PIRIGGHELT VSASIGIVER
      421 GLEGTSAPDL VRDADITLYW AKADGKSRWA LYDPDRNAKE IARFTLSATM PAALERDEFY
      481 VDYQPLVRLE NARVVGVEAL VRWQHPEFGR LAPDRFIELA EETGLIVPLG RWVLRKACEQ
      541 GRRWLDEFAE LAPYVSVNLA VRQSRDPELV RDVKRILDET GLPPRHLQLE LTESAIMGTA
      601 DEPLEALRAL SDMGVRIAID DFGTGYSNLA YLKHLPVHEL KIAGSFMEGL RAADEEDPVD
      661 AQIVSTLVQL AHALGLGVTA EGVETPSQAK RLHRIGCDTG QGWFYAKPMA PEGIDEMLRR
//