LOCUS ACU40600.1 1614 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 conserved hypothetical protein
protein.
ACCESSION CP001630-6626
PROTEIN_ID ACU40600.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_6804"
/inference="similar to AA sequence:KEGG:sce5242"
/note="KEGG: scl:sce5242 hypothetical protein"
/transl_table=11
BEGIN
1 MTAALDAGAY EILRARLADQ AAGLAGAAEA LNTRRLEAFG GAELRLLGTE QVRTGANLVP
61 VDVVEVAGLL LVGYNAPAAP RGDETAVAEV FSLHRRAPRA GGDGSQSDVD GSATLLDAGD
121 DDLPGLLDDP GFLRDFAELH RYYRQARLVR LRRVGGRLLA VFQTGARAQD IRVLRWELGV
181 DGAVRYLDNR GERDHVHPPT HDFTWTPATR EDHVLGRHPH ISVRGEVFVS AVGGSLVLKT
241 EDDPDSDRAV LREPVDDPLQ SLADADVEHA RVGPLVLIRV RPYNETAWRH LVFNTRTGAA
301 TRLDGIGASC VRLPDDQGLV FPGGYLLATG AARTFDGVDT GGLAFDRVVR SPNGEDVLYA
361 FRAADRALLL PYNVIRKEVA APLPCRGHAL FDDGGLVLLR AGGDEPTRVH PVQVWLTPFQ
421 SDTHAAAQRT GTGPLERVGN ADLVRGISDC LSVVAAAEES EPTAAVFEAL IAACARVVDT
481 HHWLGDADLG DLRTPVTRVR ATAQLVLDEF ETVRELTAQA RGALSDADER VTALLRRAHS
541 DVLDTADAWV RLLTDLRGAQ GALVTLKEMR YADDERIDGL VSTLDGEIAS VGSRAVAFLG
601 REDAFAAHQE QVDSLLAKAA ELRTTAEAAP LAQELLAQQR GLEVLTEVVG GLDIADATAR
661 TSVLERIGTV LAGLNRVRAT VDGRRRDLVA AEGRAEFAAE LALLGQAVTG AIAVADTPER
721 CDEQLGGLLL KLENLESRFG EFDDFLARLA DRRTDVYEAF SSRKQALLDE RARRADRLAA
781 SADRVLAGVA RRVVGLSSQD EVNTYFASDP MVARLRAVAD ELRGLGDQVR AEELDGRVLA
841 ARQEAGRALR DRLEMFDGDA IKLGAHRFAV NTQPVDVTLV PKDGGMAFAV TGTDFRAPVR
901 DPGFAATAPF WSQAVVSETA EVYRGEHLAA SVLAEQPADE LRVGAEAGTL PELVRHVAES
961 RLDEGYERGV HDHDAALLLA ELVRLADGAD VLRHPPASRA AAQYLWAGAD EEDRRRWSLR
1021 AASLGRARAR FGRSAAVDAL CAELGERAGD PTAGEYLFEE LCRTPLAFAS GARARALTEA
1081 FHRALGDRSE LDADLAAFAD DADARRSLVE GWYEAFLGGV ADPDLPEAVV AEVCPDLPRR
1141 AVDAPVESEV GGLLGDHPRI SGGRLAVRLD ELLARTAAFR ADRVPAFRAY QRLRDDLVAR
1201 ERDRLRLDEH RPKVMGAFVR NRLLDEVYLP LIGDNLAKQL GATGDAKRAA QMGLLLLISP
1261 PGYGKTTLVE YVADRLGLLL VKVNGPALGH GVTSVDPADA PNATARQEVE KVNFALEAGN
1321 NVLLYLDDVQ HTSPEFLQKF ISLCDGQRRM EGVWEGRTRT YDLRGKRFAV CMAGNPYTES
1381 GKRFRIPDML ANRADVWNLG DVLSGREELF SLSYVENALT ANPVLAPLSS RSRADLELLV
1441 RMAAGERISR DRLGHTYPAA ELEQVLSVLR KVLRLREVVL AVNRAYIASA GQADASRTEP
1501 PFLLQGSYRN MNKLVEKVVP VMDGTELEAV LDDHYLGEAQ TLTSGAEANL LKLAELRGVL
1561 DGERARRWAE VKAGYLREKA LGGGDDPLTR AVGAVGLLAD RVEEVRKAIE GLHD
//