LOCUS ACU40258.1 1645 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 hypothetical protein protein.
ACCESSION CP001630-6284
PROTEIN_ID ACU40258.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_6457"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: eln1; tropoelastin 1"
/transl_table=11
/db_xref="InterPro:IPR002155"
BEGIN
1 MDPSAALPDG DCAAEGCAAG LDGGRTVVDA PGVCAAGGVL AIGPPVGGVV TAGPLVGGVV
61 TAGPLVGGVT AGPLVGGVAA GLLVFGLAAG LLVGGVTAGL LVLVVAAGVF AAGGVAAGVA
121 VGACVVSAPG LGAVLPGAGA FGVVLPGVVL LGAGVVDGVV GGVLAGAGVL GLVLLGAGVL
181 GDVAGGVVLA GGVTEGPLVG GVLACGVPGV GGAACGVLAE GGAGVEDGAG VVCADGAAGG
241 GVLVVWGAGA GVLGACAAGG WAAGGGVAWL WADGCCGAGV GVLWGCASGA LTCGGATGGA
301 PTGPAFGWVA GGGVLGDWVL GGCVLGDWVL GDWLLGDWVP GGCVFAPGVV AGAGVGVLVV
361 GALVLGVLAG GGVAGVEVPA VLGAEGGAGG AAGGVVDVGG VTCGVFGATG GGVGAAAGGT
421 FRPPLLPCVA AGGVPCWFVV GVFCAFGAGV LGEVTPGVGP AGVGVLGVWL ACGVLGDWLA
481 GDGVLGDGVP GDWVPGDWVL GVEVPDVGLA GVGVLGVEPA GGGVLGVGVL GVGVLGCDDT
541 GDGALGCDDT GVGVLGCAGV GVGAVAGGVK PPRLPCAPGD CVPEGCALGV LTAPDGGGGV
601 PRPPRLPVLP AGGGVVGEPG VDVVGDVGGG VVASGGGTFR PPRLPCAPGG VAPVLGVGAF
661 VPGGGVVGEG VVVGGRPRPP RLAGAFGPGV PPGVVALGAP VVGVPSGGGA VGVLGVGVGA
721 APGVDGPDVG ADFTVPSPTG GLGASNTPFG VLGPPNFEPP PVVAAGGTAP PAAGGGAMPP
781 AIGGVAPGAV GAPGRPPGCA VWDDGGVAPC VGPEVPGICA LGTGPPVVGG VLGIAVGIFG
841 APPGAPPGAA PGGVEPGGVE PGGVEPGGVE PPVTGGVLGV AVGTFGVGVG AAAGVDELDV
901 GAFLIVPSPP TGGFEVSKTP FGVPGVTYFD PPRSPPAFGT PPAPAAGAPA MPPPMGVPIP
961 PAPVVGRAVV GAPVCDVGEV TDGDPGADPG ADPVGDEPVG VAVGTPPNEP ALGVGIFGVP
1021 PPPVVGDAEG LAVGTSVPAL GADEMVPLLP TGDLPASNTP LGVLGVTYLD PPRSPPPAVA
1081 GDPAGEIGGT PPRPGVAPRP PVDPVGEDGV ETAPPVLVLP RTPLDGPCAP PVGGVYPPTD
1141 GPPTAPAFGT LPAPPVDPFG EVTGLTAGPP TAPALGTVVP PVAPFGEVTG PTAGPPTAPA
1201 LGTVVPPVAP FGEVTGPTAG PPTVPALGTV VPPVAPLGEV IGPTAGPPTV PAFGVVPPVA
1261 PLGAVTGPTA GPPTVPAFGV APPVAPFGEV IGPTAGPPTV PAFGVAPPVA PFGEVIGPTA
1321 GPPTVPAFGV APPVAPFGEV MGPTAGPPTV PALGVAPPVS PLGAVTGPTA GPPTVPAFGV
1381 APPVAPLGAV TGPTAGPPVA PLGPIGPLPV APGTFVGALT WAPPGPLVPS GPPVVAPGTL
1441 VAWLVFGPCG PVVPICPDVD APGTLVAWLV FGPCEDGAPM SPPAAPAGFC APESGLILVN
1501 CSRANWSFWK CVSRVALIPS WTLPMVVAAL FACSTAFTFD AFSAGTATMP SGPSAFPPSC
1561 NPRSPPVMAA NRDWRSPALD CNPCMEESFM EKPELPVGPP PEDPGDGVEL PPPEGFGFEP
1621 PGLGLELPGS APPPNFAMND CLRCC
//