LOCUS ACU40232.1 1766 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 WD-40 repeat protein protein.
ACCESSION CP001630-6258
PROTEIN_ID ACU40232.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_6431"
/inference="protein motif:PFAM:PF00400"
/note="PFAM: WD-40 repeat protein; pentapeptide repeat
protein; SMART: WD-40 repeat protein; KEGG: scl:sce3623
hypothetical protein"
/transl_table=11
/db_xref="InterPro:IPR001646"
/db_xref="InterPro:IPR001680"
/db_xref="InterPro:IPR007111"
BEGIN
1 MLDADDNPVG GAVLLAGGKV MTCAHVVNHA LRRHEREAGK PDAPVRLQFG PRTVTARVAH
61 WMPPPAREGD PGDDIAGLEV TPPPDIPPAR LITTLPRPNT VVRIFGYPGK PLRPDGAWVD
121 ALVKGRNSRG HLQLESTSAL RVQPGFSGSP VWDDVTGRVV GIIATAGTST PDSYAISAEQ
181 LRVGWSALGS SRTAKRPDTV TALHLPGPRA GGRGWAFTAS DLLRDLPADT PPDLLVVAGD
241 LTEQGGKAEF AQAFRLLADL AEDLDLPRDR VLVVPGAHDV NRKACKAYFD TAEADDEAPV
301 PPFWPKWKQF SAAFDRFYDG HSPTFTADEP WTLFEIPDLS TVVAGFNSTT ADTHERATTS
361 LGRDQVARFR TWLDGFREPD RLRLGVVHGE SSGSAWPDEL HHLFSSPADN DGYQLVSFDA
421 SRTTRQARRF ADGRWTGDTR ISPTGTAWRV TERRRAEPAQ ESPPPPPGNA FFDRVVEATR
481 FAHPDASTVP HPEKSYLRVG LPIPGGGVDY RPVGVVDGDL TERAVDAFVV DVHRHFTAED
541 PGTRSEIVYS GRLASADLVG RATRRGVSPR SWVEYRGLLD LGPLEERLRN ALARDKVYPE
601 ALYTAQRYRV VGRHSSGEVE PDLLARVLDW LGLRARQFVV VLGDFGRGKS FLLRQLARAL
661 PEHLGGVTPL LVELRSLQKA PTLNQLLANA LVGQGVAVVD VDKLRYMIAS GRVALLFDGF
721 DELELRVGYD NAADYLRTLL EVVGGEAKVV LTSRTQHFRS AAQVLTALGD EVVATGASRV
781 VELEDFTREQ IVEFLTKRYG GDHERARARL RLLDEVQDLL GLSRNPRMLS FIAELEEDRL
841 REVQQRKGTI SAADLYQELV DSWLLHEQAR QQHRHGLPVL GKDERLRVCT DLATRLWSTG
901 ANAIQEDELG VVAVAALTEV ADLGYTQDQV AHAIGSGTLL VTGESGFGFV HRSVMEWLVA
961 NEAARRLRAG EGVGEVAGRA MSRLMVDFLC DLAGHARARR WALAVSVDGL ASAEEKQNAL
1021 LVVDRLGGSG LGDLSELDLR KADLSRLDLR GTRLVGSDLR GQRVDGAVLR GVDLTGADLR
1081 GARVTGGDLS EAVLTGSRWE GAALLGVAGT ERRPELRVAA VSGRDRAEVM LARSGPVLAV
1141 AYSPDGERIA LAHGRQVELL NAAGHSSLRF VGEHGGKVTS VAFSPDGTRL VTGGEDGTAR
1201 VWTTDGDHVL TLTGHERTVT AVAFFPDGRR IATGSRDGTT RTWTSAGEPL RVLTSDSRPI
1261 TALALAPDGR RLATGSSAGT AHVWTAGGEH VAELAGHENW INAVAFSPDG ARVTTASSDR
1321 TARTWTTDGT QVAVLTDDVG PVTALAHSPD GKHVATGASD GTGHVWTADG SLVATLLGHQ
1381 GVITSIAYSP DGAIITTAGS DKTARTWNAD GGLVAIPTTR SRTVTSAAFA PNGRFLATAS
1441 SDGATRVWTR EGVLVTTVHG DGNRVNAVAF SPGSHRIATA GHDGTAHVWA GDGSSTATLV
1501 GHEHRVNAVA FSPNGELIAT AGSDQTARLW DSEGSARAVL TGHRNWVTSV VFSPDGELVA
1561 TASHDGTARI WSVDGEPVTD FVKHPRPVTS VAFSPDSGTI ATGGNDGTAR LWTVEGGLLR
1621 SLPRHRGRVT AVAFSPNGAH VATAGSEGDA HVLGLDGTVR AVLSGHSESV MTVAFSPRGN
1681 HLATGSVDGT TRLWTADGAL VATLIATDDG WATLFPDGSY KHGGDVGAFL WWAIKSCRFE
1741 VGELDHHYPE IRRLPHSAPM PPPLTS
//