LOCUS ACU40056.1 1436 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 ABC transporter related protein.
ACCESSION CP001630-6082
PROTEIN_ID ACU40056.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_6252"
/inference="protein motif:PFAM:PF00005"
/note="PFAM: ABC transporter related; ABC transporter
transmembrane region; SMART: AAA ATPase; KEGG:
see:SNSL254_A2969 ATP binding cassette"
/transl_table=11
/db_xref="InterPro:IPR001140"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR017871"
/db_xref="InterPro:IPR017940"
BEGIN
1 MFAALPQLRA VSFREAALSR PGGRKRPADL SGDRPSVEIV TNSPGWIRRL ASACWQHRSL
61 VVWSVLAAVV GVGLQAAGPL LLKVAVDDAV AGRTDRLALL ASVLVGVELL TFGTAFVRRY
121 LGGRLAVDVQ HDLRQAVFSS VQRLDGQKQD VLRTGQVVSR SITDLQLVQS LLSMTPLAFG
181 TVAFALASLV AMCWLSPPLT LIALVIVPAV GVVAARTRLT LFPATWSAQQ RAADVAQQVE
241 ETVTGVRVVK GFGQETREVA ALERRARVLF AERMRAARLT ARPSATLNAL PYAGQVAVLA
301 AGGWLALRGE VSLGTFLAFA SYVAALIGPT RLLASLMVTA QLARAGVERV YELVDSQSAV
361 VDAPDAVDVP DGPVGVRLDG VVFGYARSEP VLSGVSLEVA PGETLALVGT AGSGKSTVSL
421 LLPRFYDVHE GSVSVGGVDV RGLRLGSLRR TVGVVFEEAF LFSDTVRANI AYGRPDATDA
481 EVEAAARAAE AHGFISALPG GYGAVVGERG LTLSGGQRQR VALARALLSD PRVLVLDDAT
541 SAVDTATEAA IHRTLASVTA TRTTLLVAHR RSSLALADRI AVLDAGRVVD VGAHAELWGR
601 CELYRELLAG PGEAIERVAG AAAGSGALGA AGSAVGPESG NGAGSVDRAS GAAARNGGVS
661 APWPGADLVE QRADSRREGA ANQSPRVSAE QTAERTAERS GADAPTSGAE SAPTSGAESA
721 SSSASSSGAG VAPSSGAGSA PSSAPAGVTP ALWPEVVDDE LVLRAENRSV AAPSGGRRGP
781 GTSALAGGAP PTPELVERVR TLPPATEEPR LPGEDPSAPD PGFRLLRLLR PVRWSMVAVG
841 ALLLVDTALA IALPNLVRIG VDRGVGGGEQ GALWVVSLVG LLLVAVGWCS TRIGTVLTAR
901 VGERLLYLLR VRSYAHLQRL GLDYYEREMA GRIMTRMTTD VDALSSFLQT GLTTFVISVL
961 TVAGIAVALV VTDPGLALVA LSVLPVLAVA TVLFQRVSSR AYAEARERVS AVNADLQENV
1021 SGLRVAQAYT REERSAEAFA ARSDAYRRAR IRAQRYIATY FPFLALLSGV AQAAVLVVGA
1081 YRVAEGSLSP GVLLAFVLYL GLFFSPLFQL SGVFDGYQQA RVGLARIGDL LRTPTTVPPA
1141 ADPAPVERLR GEVELRDVVF RYSGAEEPAL DGVSLRVRAG ETVALVGETG AGKSTLVKLV
1201 ARFYDVTGGR VLVDGRDVRE YDLGAFRRRL GVVPQEAHLF GGDVAENVAY GRPGATPAEV
1261 EEAVRAVGAL PVVAALPNGF RQQVGERGQG LSAGQRQLVA LARAELVRPD VLLLDEATAA
1321 LDPATESAVL AASDHLSGSR TTFVVAHRLA TAARADRIVV LSGGRVAEEG THEELLALGG
1381 QYARLWAHGA PEHGGVEGAG AADESAADGG TIVEASATAG THGVTATAKA GDAPGA
//