LOCUS ACU39960.1 709 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 transcription termination
factor Rho protein.
ACCESSION CP001630-5986
PROTEIN_ID ACU39960.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_6153"
/inference="protein motif:TFAM:TIGR00767"
/note="KEGG: bba:Bd0065 transcription termination factor
Rho; TIGRFAM: transcription termination factor Rho; PFAM:
H+transporting two-sector ATPase alpha/beta subunit
central region; Rho termination factor domain protein; Rho
termination factor RNA-binding; SMART: AAA ATPase; Cold
shock protein"
/transl_table=11
/db_xref="InterPro:IPR000194"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004665"
/db_xref="InterPro:IPR011112"
/db_xref="InterPro:IPR011113"
/db_xref="InterPro:IPR011129"
BEGIN
1 MSNTDVLSSD SAAPNAAASS GAEENALSTP TNGGAPARKR AGLSGMVLAE LRELAGQLGI
61 DSTAKLRKGD LIAAIKERQG GTSGRGSAAT PPKAEKPKAE KATAKPAEAP APAAEKAVEK
121 PTQQQLDVPE RAGEEETGRR GNRRRRSANR PAGSPEAPVA AAAPAAPAQV EAPQQAEQRP
181 ERVERAERSD RGDRGERSER QGRERGERSD RGDRSDRGER AERSDRGERS DRGERSDRGE
241 RSDRGERSDR GERGDRSERG ERGDRNRDRD RDRGERGDRN RDRDRQSNNV PEDDGDDEGG
301 RRGRRFRDRR RRGGRGEGAG VGTDTEVRDD DVLLPVAGIL DVLENYAFVR TSGYLAGPND
361 VYVSLSLVRK HGLRRGDAII GAVRQPRDGE QQRQKFNPLV RVDKINGLDP EESRNRPDFT
421 KLTPLYPNER LRLETEPHIL TTRVIDLVMP IGKGQRALVV SPPKAGKTSV LQSIANAITT
481 NNPECHLMVV LVDERPEEVT DMQRSVKGEV IASTFDRPPS DHTTISELAI ERAKRLVEMG
541 HDVVVLLDSI TRLGRAYNLA APASGRILSG GVDSTALYPP KRFLGAARNI EGGGSLTVIA
601 TALVETGSAG DSVIFEEFKG TGNAELKLDR KIADKRTFPA VDVDSSGTRK EDLLLSPDEL
661 AVMHKLRRVL HALDGQQAID LLLDRLRKTR TNIEFLMQVA KTTPGADND
//