LOCUS ACU39566.1 1037 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 isoleucyl-tRNA synthetase protein.
ACCESSION CP001630-5592
PROTEIN_ID ACU39566.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_5753"
/inference="protein motif:TFAM:TIGR00392"
/note="TIGRFAM: isoleucyl-tRNA synthetase; KEGG:
rco:RC0953 isoleucyl-tRNA synthetase"
/transl_table=11
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002300"
/db_xref="InterPro:IPR002301"
/db_xref="InterPro:IPR013155"
/db_xref="InterPro:IPR015413"
/db_xref="InterPro:IPR015905"
BEGIN
1 MPYPKVGADS VPSQPSFPAL ERDVLGFWED DQTFQASVDA RPAGENGSNE FVFYDGPPFA
61 NGLPHYGHLL TGYVKDLVPR YRTMRGQHVE RRFGWDTHGL PAEVEAEKQL GFSSKSDIEA
121 FGIDKFNDAC RTSVLRYTDQ WREYVTKQAR WVDFDNDYKT LDLDYMESVM WAFKTLWDKG
181 LVYEGFRVLW YCWRCETPLS NTETKMDDTY RDRQDPAVTV GLRLETGELA LVWTTTPWTL
241 PSNLAAAVHP DVDYVTVEAN GEKYLLAEAR VAAYARELGE EPPVVARCKG SDLVGRRYTP
301 PFDFFLGRDN AHQVLPADYV TTEDGTGIVH IAPAFGEDDK AVTDAAGIEV VVPVDPHGCF
361 TAEVPPYAGQ HVFEANKVII RDLKDAGLLL RHETYDHPYP HCWRCDNPLI QRAVSSWFVA
421 VTRFRDRMVE LNQQINWAPE HIKDGQFGKW LSNARDWNIS RNRFWGSPIP VWVSDDPEFP
481 RVDVYGSLDE LERDFGVRPT DLHRPAIDEL TRPNPDDPSG KSTMRRVPEV LDCWFESGSM
541 SFAQVHYPFE NADWFENHYP GDFIVEYNGQ TRGWFYTLHV LATALFDRPA FRNCVAHGIV
601 LGDDGQKMSK SRKNYPDVNE VFERDGSDAM RWFLMSSPIL RGGDLVVTER GIRDGVRQAV
661 LPLWNSWYFL ALYANAEGVE GAWRTDSSHV LDRYALAKTH DLVARVTGQL DEYDISGACA
721 SVRDFLEVLT NWYVRRSRDR FWAGDQDAVD TLHTVLEVVS RVAAPLLPMT TEVVWRGLTG
781 GRSVHLTDYP EAADLPADPE LVAAMDAVRQ VASTALSLRK ANKLRVRLPL AKLVIASPSA
841 GSLEGFREIL SDEVNVKAVE LTDDVDAHGH FQLAVNARAA GPRLGPNVQK VIKAVKAGDW
901 SEVDGRVVAA GIELFPQEYE QRLVATDPAA TAALPGGAGL VVLDTEVTEE LAAEGVARDL
961 VRVVQQARKD AGLDVSDRIA LTVDAPEGAA ADAARAFEAF VREETLAVEV AYGAVDGGSE
1021 GAVGDGAKVR VLVVKAG
//