LOCUS ACU39285.1 943 aa PRT BCT 24-DEC-2013 DEFINITION Actinosynnema mirum DSM 43827 Tetratricopeptide TPR_2 repeat protein protein. ACCESSION CP001630-5311 PROTEIN_ID ACU39285.1 SOURCE Actinosynnema mirum DSM 43827 ORGANISM Actinosynnema mirum DSM 43827 Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema. REFERENCE 1 (bases 1 to 8248144) AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O., Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C., Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P. TITLE Complete genome sequence of Actinosynnema mirum type strain (101) JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009) PUBMED 21304636 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 8248144) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Actinosynnema mirum DSM 43827 JOURNAL Unpublished REFERENCE 3 (bases 1 to 8248144) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082379 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Actinosynnema mirum 101, DSM 43827 Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064 GOLD Stamp ID :: Gc01024 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 8.9x Sanger; 20x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: "Blade of grass from Raritan River NJ, USA" Collection Date :: September 1976 Isolation Country :: USA Latitude :: 40.491816 Longitude :: -74.322087 Oxygen Requirement :: Aerobe Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 10-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Nocardicin A producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Actinosynnema mirum DSM 43827" /mol_type="genomic DNA" /strain="DSM 43827" /type_material="type strain of Actinosynnema mirum" /db_xref="taxon:446462" protein /locus_tag="Amir_5467" /inference="protein motif:PFAM:PF07719" /note="PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: mxa:MXAN_1392 hypothetical protein" /transl_table=11 /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR011717" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR013105" BEGIN 1 MTEEPGRDEI KQAAEQQFAQ AYHLPEGMAR HEALERAARA ADACDHLPLA VSCRIALLRS 61 AHDLNRYDLM LAPFAWCGAA ERRDPTAFDE WETHNYDWAH KWIVTGLLAD PRFSLEQIGS 121 VLEQLATRYR QHGFSAQPVH GARTELADHV GDEAGYREHF ARYLAAERGP LSDCEACVVE 181 EQARHLIWQG RPAEAIAHAE HQLAEDTGCA GQPQGILTTL TPAFVEVGDL ERAREAHVVA 241 HRAIRDDLVT GYLDDHLVFC ATSGNVERGV ELLKRHLHRV HSSTNPAQAM RFSAGAALLL 301 DRLDRPEEFA VPRDGRTEVL SADELREFLR AQALEIAARF DERNGSDAVS ARIRRTLALA 361 DTEPVPLAVP TAADAQIDAP VESAVDEEVL SDPVELAERA LKAFSGNDFL TGMRLLRSLP 421 ADLDALLPDV LAARVAARRA LASKPGLDDE AALAAFRAAV ARLEELGEPD LAVRYRSRGA 481 GRWSELTGGL EAAVAEAREC VALAATPRTL VLAKLVLAEL VERSDDGLVP EALELVEQAR 541 ELAEPDADLL VRVRCARAEH LASADRLEEA REIAEALLAE DPPPSVRFNA LRLLGHLAVL 601 REDGDAALEA ADALVAASGS VRGPWTVEAH QRRVSLVEHL GRYADRMGAL REAVAVTREL 661 GSEQEVVWAC FALAGGYLNV RRPIEAAEAL EEALRILEAG DLPPSDSVPV LFRLGKVCTQ 721 LGETDAALRH LEAALAAAPE EELLQRAVTL DALGAARSQA GQEVEGAEAY EGAARLWTEI 781 GDAYEAAASW MEAASTRPND DVAESFHAVS HAEGLLEHVD DEEQVLMLRT RIAAIRGFLH 841 AQEEDWAKAL EHNGVAEELA DQSGDEHRRL FMITRGARFL LAAEDPENAE AEARRAGALV 901 TDRTPPPIIG DLAGALEEAL RAQDKQVVGD ALLRSLNARL NDE //