LOCUS ACU39197.1 1066 aa PRT BCT 24-DEC-2013 DEFINITION Actinosynnema mirum DSM 43827 WD40 domain protein beta Propeller protein. ACCESSION CP001630-5223 PROTEIN_ID ACU39197.1 SOURCE Actinosynnema mirum DSM 43827 ORGANISM Actinosynnema mirum DSM 43827 Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema. REFERENCE 1 (bases 1 to 8248144) AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O., Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C., Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P. TITLE Complete genome sequence of Actinosynnema mirum type strain (101) JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009) PUBMED 21304636 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 8248144) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Actinosynnema mirum DSM 43827 JOURNAL Unpublished REFERENCE 3 (bases 1 to 8248144) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082379 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Actinosynnema mirum 101, DSM 43827 Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064 GOLD Stamp ID :: Gc01024 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 8.9x Sanger; 20x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: "Blade of grass from Raritan River NJ, USA" Collection Date :: September 1976 Isolation Country :: USA Latitude :: 40.491816 Longitude :: -74.322087 Oxygen Requirement :: Aerobe Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 10-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Nocardicin A producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Actinosynnema mirum DSM 43827" /mol_type="genomic DNA" /strain="DSM 43827" /type_material="type strain of Actinosynnema mirum" /db_xref="taxon:446462" protein /locus_tag="Amir_5378" /inference="protein motif:PFAM:PF07676" /note="PFAM: WD40 domain protein beta Propeller; KEGG: hypothetical protein" /transl_table=11 /db_xref="InterPro:IPR002035" /db_xref="InterPro:IPR011659" BEGIN 1 MDRPVIGRVG RPAASLALAV LLGGFLLADR APQATAQDHP LSPYLVGYEG GDDVHSANAR 61 GEDQRALSGP DRGEAQPAYS PDGTRIAYVQ WGVEAPPSSA TPSSATPSPA PGPPVTGFAG 121 LVVANADGTS PRVLNPGIGG AEPTWSPDGT KLAVTTEAGI RVLRVADGAV LADVPAPPTL 181 SARDSEPAWS PDGTTIAFTR RIDGQETPST GPYAVVGGTS PGGDYRTGVS LTTDEVPNNP 241 DIVFLLDNTG SMGGYIQDAK AKLTGVLARI SQLQPQARYG LATYRDIDEP EHYELRQRPT 301 ADLSAFQTQL NSVTAGGGGD GPEDWFNGLR QLATDPTVFT RDGSRIVVLL GDAPPHFDCD 361 NPAAAYCPRY PTRDQVVSAL TGAGAQVLAI PLGTPSSLDA GGHATDIANA TDGLLIDGSI 421 PPDATADAIA AGIRDLPVTV TPQHSCDHGA TVGFDPPGLT QRGGGQVSFA ETVKLPADIR 481 PGTTATCQVD FLFNGQLPEP RRTQHLTATA QTPGAPTVVV SGAVVTSPDG QPAPATFTAT 541 ATDATGAPLT PGCDQTPGAR YPVGFTTVTC TATDASGRTG SATAPLAVQG PGTGQGTGIW 601 FSAVDQDTLR STRQIPFTAK VNEPCANDGT APAWSPDGQR LAYAHRAEHL CTANADGTSA 661 TRIVSATGPN HPEWTPDAAA ILFDGDDDGR RAIWSVPPNG GDPVTLVSRA DGAAHPTTRR 721 LPDLAVTASA SPPDVVFGGG AEYLFTITST GLVTAPGAPI TLDLPPGLEV DEVLTTSGSC 781 RPDATRCTLG GLARGQRAEI RVQATATTAG EQTATATAPV DINPGDNTAR AKVTVAEEVV 841 PPANPGSLSL AVAAVPPDSY VGGQDVVLSY RMRNGSPEPM TDVRLVTALP PELGAPTSAG 901 PGCTADGEEC ALGTLHPGQL AEVRLTLPAR AATRGPAGGS VFTTGPDSDV VDNTAAVEVS 961 VRQPRLTVDP PIGPPGFVAR VVGVDFPPGA EVRLAWSAGV TQEPATARVG GDGGVDAQLL 1021 VFPRDRLGPR DVLAAPLTGP RFGQVASNPF LVVPRTVQPP DFVFRG //