LOCUS ACU39171.1 962 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 glycine dehydrogenase protein.
ACCESSION CP001630-5197
PROTEIN_ID ACU39171.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_5352"
/EC_number="1.3.1.74"
/inference="protein motif:TFAM:TIGR00461"
/note="KEGG: hch:HCH_03861 glycine dehydrogenase; TIGRFAM:
glycine dehydrogenase; PFAM: glycine cleavage system
P-protein"
/transl_table=11
/db_xref="InterPro:IPR003437"
BEGIN
1 MTQDRIPLAA LEHGTPFADR HVGPRPAELA RMLDVIGVGS LEELAQRAVP ESIREGDLAL
61 DLPEPATETE ALAELRALAA RNRPMTQMIG LGYHGTFTPA VIRRNVLENP AWYTAYTPYQ
121 PEISQGRLEA LLNFQTVVGD LTGVPVANAS MLDEPTAAAE AMTLVRRAGR SKSTKFVVDA
181 DTLPQTLAVI ETRAEPLGIE IVVADLSQGL EGLGLGGDFF GVLLSYPGAS GVVRDHEGLI
241 AEIHKAGAQA VVAADLLALT LLRPPGEIGA DVVVGTTQRF GVPMGFGGPH AGYMAVRSGL
301 ERQLPGRLVG VSVDADGNPA YRLALQTREQ HIRREKATSN ICTAQVLLAV MASMYAVYHG
361 PEGLRAIATR AHRMATVLAA GLCEGGVDVV HGEFFDTVRA SVPGRADEVV AAARELGVNL
421 WRADADTVSI ACDETTTRAH LALVWRAFGV AVADVDALDS DTADGIPADL RRTTDYLTHP
481 VFHRHRSETA LLRYLRSLSD KDVALDRSMI PLGSCTMKLN ATAEMEPVTW PEFADLHPFA
541 PASDAEGLLS LIGDLEGWLA EVTGYDAVSL QPNAGSQGEF AGLLAIRAYH RANGDFERDV
601 CLIPSSAHGT NAASAVMAGM RVVVVKCDER GNVDLGDLKD KVLAHAERLA AIMITYPSTH
661 GVYEDTVREV CGLVHDAGGQ VYVDGANLNA LIGLARYGKF GSDVSHLNLH KTFCIPHGGG
721 GPGVGPIGVR SHLAPYLPNH PLQPGAGPET GVGPISGAPW GSASILPISW AYVRMMGADG
781 LRRATMTAVA AANYVARRLD EHYPVLYTGE GGFVAHECIL DLRPLTKATG VTVDDVAKRL
841 ADYGLHAPTM SFPVAGTLMV EPTESEDLAE IDRFVDAMIA IRAEIDKVGS GDWPADDNPL
901 RNAPHTAASV TGEWAHPYGR DLAVFPAGTS AAKIWPPVRR IDGAKGDRNL VCSCPPISAF
961 GS
//