LOCUS ACU39143.1 1025 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 transcriptional regulator,
SARP family protein.
ACCESSION CP001630-5169
PROTEIN_ID ACU39143.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_5323"
/inference="protein motif:PFAM:PF03704"
/note="PFAM: transcriptional activator domain; TPR repeat-
containing protein; Tetratricopeptide TPR_4; NB-ARC domain
protein; transcriptional regulator domain protein;
Tetratricopeptide TPR_2 repeat protein; SMART:
Tetratricopeptide domain protein; KEGG: scl:sce6858
hypothetical protein"
/transl_table=11
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR001867"
/db_xref="InterPro:IPR002182"
/db_xref="InterPro:IPR005158"
/db_xref="InterPro:IPR011717"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
BEGIN
1 MRIRLLGPVA VGTDAVQAAL GGPKPKALLV ALARQGGHVV GIDRLVDLLW GETPPASGTA
61 LVHTYVSQLR RALAKVGLPD ALRTSSPGYR LVAEPGDCDV DVFTAEHTAA REAERSGDHA
121 AAHAAYGRAL ALWRGPALDG VDADFALAWA QELAEHRLAA RDGLARTALA LGRPLSAADE
181 LRGLVAEHPL REESRALLMR ALAESGRQAD ALEVYRDGRR HLLDELGIEP GRGLRELHTA
241 ILDGSLTTPA ADVPRPAAAA AAVTATATAA PARPLTRTLP PDINDFTGRA DELAAILALG
301 ATGPDRPAAP VVVVSGAGGT GKSALAVHAA HLLAEQYPDG QLFTDLRGHG APPSASTVLA
361 RFLGALGVPV EDLPPGLDDR IALYRRHLTG RRLVIVLDNA RTEQQVRPLL PTEPGCLVLV
421 TSRARLAGLG SAVDLEVFDA GSAVEMLGRI IGSDRVASAP DAARRIATLC AGVPLAIRAA
481 GAKLLARPHW PLKSLATRLS DERRRLDELT VGDLAIRSCL GLNYAELDER AKHAFHLLCL
541 LDLPDFGWWV AAPLLGVDTA TAEDLVENLV DLRLLDVAGI DPIGRVRYRF HDLVQLFGAE
601 LAAQHEPPGA ATDAVAACLA AWADLAETGV KGLPRVTLSP RLPAAPAGAP STDPELVAEV
661 EADPAGWLDA ETAAAVRAVH RAHELRVDAV TTLRVAVLLS SAFAARNEFE AWQRTLRVAL
721 ALAEESGDPR AGAVVLAGLG QLHAELDEYD EALAHFERAL ERADAAGDDA VRAVCLAGTG
781 TAHRERGNPE LAATALTAAA ELGAALADDA VVAAAEYGLG ALRRDLGDLA GAADRFDRAV
841 RRYAAAGDRR GEALALRGVA LCHRARGEHR VSAELCERAA VALDEVGDAL GAAYARQAWA
901 KAALRLPGSP TAELAACLDA CLAVCERGND RFGVALVTRT TGELHLSRGD LATAREHLRA
961 ALAGWTELGL DTWRARTLRD LAAADPEHQD EHWALARELL SGTGAREERE LAETTPVGWR
1021 AAVVR
//