LOCUS ACU39096.1 989 aa PRT BCT 24-DEC-2013 DEFINITION Actinosynnema mirum DSM 43827 transcriptional regulator, SARP family protein. ACCESSION CP001630-5122 PROTEIN_ID ACU39096.1 SOURCE Actinosynnema mirum DSM 43827 ORGANISM Actinosynnema mirum DSM 43827 Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema. REFERENCE 1 (bases 1 to 8248144) AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O., Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C., Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P. TITLE Complete genome sequence of Actinosynnema mirum type strain (101) JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009) PUBMED 21304636 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 8248144) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Actinosynnema mirum DSM 43827 JOURNAL Unpublished REFERENCE 3 (bases 1 to 8248144) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082379 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Actinosynnema mirum 101, DSM 43827 Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064 GOLD Stamp ID :: Gc01024 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 8.9x Sanger; 20x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: "Blade of grass from Raritan River NJ, USA" Collection Date :: September 1976 Isolation Country :: USA Latitude :: 40.491816 Longitude :: -74.322087 Oxygen Requirement :: Aerobe Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 10-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Nocardicin A producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Actinosynnema mirum DSM 43827" /mol_type="genomic DNA" /strain="DSM 43827" /type_material="type strain of Actinosynnema mirum" /db_xref="taxon:446462" protein /locus_tag="Amir_5275" /inference="protein motif:PFAM:PF03704" /note="PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: scl:sce5225 protein kinase" /transl_table=11 /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR001867" /db_xref="InterPro:IPR002182" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005158" /db_xref="InterPro:IPR013026" BEGIN 1 MGWDLGIGFG DDEVGVLGPL LVRRGGVVVA VTAPKQRIVL ASLVMAANRA VSSAELVRAV 61 WGDRAPARAA HTLAVYVMRL RRALGEPQLV HTTPSGYLIS LPHGAVDLHR FADHAAHGAL 121 AASAKDFGSA VEHYQRALDC WRGPALADVP SEALHADEVP ALVEEQLRVT AELVDARLRL 181 GHGAELVPDL RRLTARHPLR ERFWSQLMVA LHRADRQADA LDAYRQAGTA LARELGVDPS 241 ESLRAVHHSI LTGDPALRGP LPSGWAPVSQ LPAPVGNFVG RADELDRVTA LLAGPAAVVA 301 VCGPPGVGKT AFAVTVGHSV RERYHHGQLY ADLRGHSTSP PLSTTTVLGR FLRALGARPD 361 SIPADEAELV RAYRDRLRGR RVLITLDNAA SAAQVLPLLP DVPECSVVIT SRNELAGDVG 421 AAAVRLDVLR GDEAWMLLTR SLAPEAADEQ GDALRELARL CGYLPLALRI ALGNLVGAHT 481 TDIRSYVDDL RGGDRLSALA VPDDDSAAVR RAFDLSHAAL RPDAAKLFRL TGLLPGPDFS 541 AFGAAALLGA DEATARALAE ELASANLVQR VGDERFAVHD LLREYAAERA RAAGDDLEAA 601 RGRLFDWYLS TASDVGDVLF PEVRPARGRA DLPDARTARA WLEAERPSLL AATERCARLG 661 PLPMAWSLVE AVGGFLGSHG HHGGFLNAVR AAGDAARAAG DTEAGGVVLA HLVAAHRNLG 721 DLRAARDAAR SGNPVGRAVW LLAGVAGVVA LDVGELAEAE DRFREVVGAS GELAHARCAG 781 LIGLGAVRLA RGELDAAEAL LREGHGLALR VGAVNLAASG ADLRGRCRGA RGDHPGAVDL 841 LREARDGWAR TGARPPHAET TAHLAAALCL AGEHGEALRT AQRALALVQE LGGSPRIEAD 901 VHNALGLVQR HLVNPEAAVA AHLRALELSG GVGYRHGVVQ AHVLLAPALL AAGRRGDAVR 961 HARIGIGLAG ETGYGGLRQA AESLLAALG //