LOCUS ACU38993.1 1023 aa PRT BCT 24-DEC-2013 DEFINITION Actinosynnema mirum DSM 43827 putative sensor with HAMP domain protein. ACCESSION CP001630-5019 PROTEIN_ID ACU38993.1 SOURCE Actinosynnema mirum DSM 43827 ORGANISM Actinosynnema mirum DSM 43827 Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema. REFERENCE 1 (bases 1 to 8248144) AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O., Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C., Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P. TITLE Complete genome sequence of Actinosynnema mirum type strain (101) JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009) PUBMED 21304636 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 8248144) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Actinosynnema mirum DSM 43827 JOURNAL Unpublished REFERENCE 3 (bases 1 to 8248144) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082379 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Actinosynnema mirum 101, DSM 43827 Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064 GOLD Stamp ID :: Gc01024 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 8.9x Sanger; 20x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: "Blade of grass from Raritan River NJ, USA" Collection Date :: September 1976 Isolation Country :: USA Latitude :: 40.491816 Longitude :: -74.322087 Oxygen Requirement :: Aerobe Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 10-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Nocardicin A producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Actinosynnema mirum DSM 43827" /mol_type="genomic DNA" /strain="DSM 43827" /type_material="type strain of Actinosynnema mirum" /db_xref="taxon:446462" protein /locus_tag="Amir_5172" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rpe:RPE_2275 peptidase C14, caspase catalytic subunit P20" /transl_table=11 /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" BEGIN 1 MTGDNSTRRQ WRTAVADWRN WRLPVKLAAV LAVPVLVALG SGLTQIGTDV RAADGYANMQ 61 RLVSLRAGLT PLVASVQDER ALSAQRAEGA GVDKRNFDAV TNETDRAANA VRDLVRNTPT 121 LGPVAEARYR DALVQLDGLP QLRDRVSSGG VDLAGGIGAY SVVIRSLTDF DQAMVGDFGD 181 ASLTGTANAL HNLAMTGEQV SWQQATVLAG VSRRGLLDTE KTMLEQSWTR FQDKVAEFTA 241 VATADQQADF RSTVAGPEVD TRNRLLQGVR TDPGTVRTQV PVKDWNTASS STLSRIEVVM 301 SRLGGELLRA SARLQDSTSD RAGVASVILL ASLFSAGAIG FVVGSYLLRS LRTLRVAALD 361 VANNRLPELV TQLREGGVRT GIEPVPVHTT EEFGQLARAF DAVHSQAVSS AAEQAELRAG 421 MRNAFINLSR RSQGLVERQL KLMEEMERQE ENPDQLANLF KLDNLATRMR RNNENLMVLS 481 GSDVARRFTR PVPLADVLRA AGSEIEQYHR VMVQTTPPVD VVGYAAGDLV RLVAELLDNA 541 TAFSPPGTQV VVSGRPRPGG GVLVDVVDQG VGLTEEGMAE ANRKIVTAAR DDSAELSASR 601 QLGLYVVGRL AGRHGIQVVL REQGAERDGV RAVVAVPSEL VRPAGTGQLP AARRPAAELE 661 RGQGGAQQSA LQSNVVHNAL QGGSGQNGAV QRSAPQNGTP QNGTAPFGAA QNGAAHNGTA 721 QNGTALGGAT QNGPTQNGAT SGGAPVSESG WAAFAGRALD QTPPAKPEPG RSEPGRSEQG 781 RSETARSEPG RSEATRSEQG GPRAEQFVMD DSFSFSVDPS APTAAPRGDA PRAADAPAVP 841 PRQVETPPGG ELPKRTATPP SRSATDPFRQ PEATQGGSTW FSKRPKAQTA EPAAHAAPAA 901 PPVTPPTAPP TEGGYAPGRA TAQFFGAPSP ARQTQPPAIP AEEVPSRHVT AAGAELPKRK 961 PRTNLDANLV TERPARAEGE SAAPPPVRRD PSATRGFLAN YQTGVRQGVR EAGDNRTGRE 1021 TEQ //