LOCUS ACU38913.1 1479 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 GAF sensor hybrid histidine
kinase protein.
ACCESSION CP001630-4939
PROTEIN_ID ACU38913.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_5091"
/EC_number="2.7.13.3"
/inference="protein motif:PRIAM:2.7.13.3"
/note="KEGG: ank:AnaeK_4253 GAF sensor hybrid histidine
kinase; PFAM: ATP-binding region ATPase domain protein;
response regulator receiver; GAF domain protein; histidine
kinase A domain protein; histidine kinase HAMP region
domain protein; SMART: ATP-binding region ATPase domain
protein; response regulator receiver; histidine kinase A
domain protein; GAF domain protein; histidine kinase HAMP
region domain protein"
/transl_table=11
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003018"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
BEGIN
1 MTTARDDTDV TLDRLLAALR EMRDGNFRRR LVVPFGSRFA EVAAVFNEIS ERNQALVGEL
61 VRVRQSVGQE GRLGERLSPG AGGPGGWAMA TDSVNGLIDD LSAPTTELSR VLAAVARGDL
121 SQELTVSSRG ELAALVDSFD SMTSTLRTFA GEVTRVAREI GTDGRLGGQA QVPGVAGTWK
181 DLTDNVNFMS SNLTAQVRDI AQVATAVAQG DLSQKITITV AGEMLELKET MNTMVDQLSS
241 FADEVTRVAR EVGTDGRLGG QAQVSGVAGT WKDLTDNVNF MAGNLTAQVR NIAQVATAVA
301 RGDLSQKITV DARGEILELK NTLNTMVDQL SSFADEVTRV AREVGTEGKL GGQAEVEGVS
361 GTWQKLTESV NSMAGNLTSQ VRNIAQVTTA VAQGDLSQKI DVDARGEILQ LKTTINTMVD
421 QLSSFAAEVT RVAREVGSDG RLGGQAQVPG VGGTWRDLTD SVNFMAGNLT SQVRNIAGVA
481 TAVARGDLSQ KITVTARGEI LELKETLNTM VDQLSSFADE VTRVAREVGT DGRLGGQAQV
541 PGVAGTWRDL TDSVNFMANN LTAQVRSIAQ VTTAVAGGDL SQKITVDARG EILELKSTIN
601 TMVDQLSSFA DEVTRVAREV GTDGRLGGQA RVPGVAGTWK DLTDNVNVMA DNLSSQVRSI
661 ALVSTAVAGG DLSKKITVEA KGEIAALADT INRMVDTLSA FADEVTRVAR EVGTDGRLGG
721 QARVPGVAGT WKDLTENVNF MANNLTSQVR NIAQVTTAVA RGDLTRKIDV DARGEILELK
781 TTINTMVDQL SSFADEVTRV AKEVGTEGKL GGQAEVDGVS GTWQKLTESV NQLAGNLTTQ
841 VRAIAVVATA VTEGDLTRQV TVDASGEVAE LKDNINRMIS NLKETTRANR EQDWLKTNLA
901 RLSGLMQGHR DLDALAGLVM SELTPLVGAQ HGAFYLVDEE SGALELTATY GRRAGGRPKR
961 FQLGEGLVGQ VAADRKTVVV SSVPRGYLEI GSGLGAATPA SIVIVPVMFQ GEALGVIELA
1021 SFGEFGHGHL DLLDQLKENI GVNVNTMQAN ARTDSLLVES QRLTEELRAG SVELEDRARQ
1081 LSSASKYKSE FMANMSHELR TPLNSLLILA KLLTDNLDGN LNPKQVEFAR TIHSSGTDLL
1141 QLIDDILDLT KVESGHMQVQ TDPVRVSDVV GYVESLTLPL AAEKGLGFDV SVQPDVPSTL
1201 HTDEHRLQQI LRNLLSNAVK FTHEGEIRLR IRTAGPSVAF DVQDTGIGIP AEKLSVIFEA
1261 FQQADGTTSR KYGGTGLGLS ISRELSALLE GRLDVRSEPG FGSTFTLYLP LGDQSLVDVR
1321 PEPEALPELL TPVDEPAEAV VAPAELPPAP MRFHGEKVLI VDDDLRNVFA LTSVLELHGL
1381 QVIYADNGIT GVRALEQYDD VTLVLMDIMM PELDGNATMS AIRAMARYED LPVIAVTAKA
1441 MKGDREKSLA SGATDYVTKP VDTDHLLRLI AFYLGLEQD
//