LOCUS ACU38418.1 1414 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 hypothetical protein protein.
ACCESSION CP001630-4444
PROTEIN_ID ACU38418.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_4585"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: scl:sce2557 putative secreted protein"
/transl_table=11
BEGIN
1 MRFVRAIAVT AAALVLAASP ATAIADPALS PEVTVPAGGK PSGAVDSVAV EQRAAVIGQS
61 WEQSRDRVVV GSGDSNGFHL MVADAATGYH WSTVATLIEP AFETDAWIGN VCVTGSGSRA
121 VVVYAPRTFT NRADLADRGG FVAVVDIPSG EVRKLRVQAS LAYFNPGCGQ GETAVLTQGA
181 GEDLDRTRIL ELDTTTGELA EPIVVPGQLT SAVPTPHGVV AADSGALVRV AANGERRVLA
241 PATGVPFRVA ADADGGVVFM QREKGDNASV RRARTTARGP AEVDTLATGA LMDLGVASGR
301 GGKVFVTGRK TTSAAGASAN VVLVDAPVGA TPSLDGQIAV TSVKRVDAVD PRAPRVDPLT
361 PQQVEITAKS LVTGAEFTLA AVAKEAENRG TSLSPALVQA KGDDAPAARA LGDDPADGDT
421 RYCSVARNDP RNQAMQPKPR QVEWAVDQAI TGSLTVSRPA NWKNLGMPAY TPQGLFPPRA
481 LSGGGRVPAQ VMLGITAQES NMWQAARFAV PGVTANPLIG NYFGIDYYND GSGDDWTINW
541 ADADCGYGIT QLTDGMRLAG KTKPGEVALP YDSQRAVALD FAANVAGGLR VLQDKWNQTR
601 GAGLVVNNGD PARVENWFFA VWAYNSGFYP QSGAGQNDGA WGVGWLNNPA NPRYPANRTP
661 FLDVSYEDAA HPQDWPYPEK VMGWAGHPIE LIETPGNLVA GYRAAWWLTE ADRWAVKPPV
721 TQFCDSGNNC EPGAQHTPND PEVIGEPAGP CAHRNASGRF DLKCWYHTSN TWKPNCATTC
781 GNELLRFDPG YAYQDDATSY PPVCANTGLP GSALVVDNLA QSVPPVRPGC TRPASNGTFA
841 FSFPAASNGT YPGKIDVHQI GAAYGAHFWM SNTHRDPARR AVGTWKLDRA HTGPMRLMAH
901 VPDPGARTRS ADYQVNAVRG GRNRVLDQGG GSGNRWVNLG TFMFDGVTPT VSLGNVTPDG
961 DGSQRIAWDA MAFIPVPGTF KEESVESVAV FDEDQNIDTE APSSWLAGPL ANRQKLYDWA
1021 TSSSSGILGL GSCAGSPTSG CAPAALRTAM ADWRTQVTTA GTDPVNHPDG ASMGTWIGFA
1081 QPHTDRPTTD QRPAHFDDDD RVKIRTKATV TFVAGPDGKV VAGSEYAVYE HRTGNTHLPK
1141 FFMDLMRAIS SDYGIAAPDL SYTIADLNAH NGTSTRATPT STGILPGRAY AYAGKKPTPV
1201 DSTGSPSTDN AVCVAAITVA GGSIGYRPML GESGPVDNMA AWVDRLEGDS RVPAKVADLA
1261 EAVREMFFDD GLLVGAESSI FTQAPPIWQE LNFKACADGS IQKIVDRPLL RASWMPDQYL
1321 YHNGRAMNLN GGFSNSNQPV WRGDFKKFSA LPDPNQEFPL WPNPYGPCDS ATDRSGNPWD
1381 ITAAPPQNPG VNPGRAHFCL DRNLATDPSH SWGQ
//