LOCUS ACU38330.1 1691 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 amino acid adenylation domain
protein protein.
ACCESSION CP001630-4356
PROTEIN_ID ACU38330.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_4486"
/inference="protein motif:TFAM:TIGR01733"
/note="TIGRFAM: amino acid adenylation domain protein;
PFAM: AMP-dependent synthetase and ligase;
phosphopantetheine-binding; condensation domain protein;
KEGG: scl:sce8257 non-ribosomal peptide synthetase"
/transl_table=11
/db_xref="InterPro:IPR000873"
/db_xref="InterPro:IPR001242"
/db_xref="InterPro:IPR002345"
/db_xref="InterPro:IPR006162"
/db_xref="InterPro:IPR006163"
/db_xref="InterPro:IPR010071"
BEGIN
1 MVDSAAQARR ELLRLMLSAA PEPPAPTRPA GGLPTSAAQR RLWFLDQLNG PNSAYNVPFA
61 LRLRGPLVPD ALWGALDDLV ARHEVLRTDL VADEDDEVRQ EVRPPAPLPR AVETVAGEDV
121 EARIAREAAR PFRLDGEPLL RALLLRVADD EHHLVLNLHH VVTDGWSETV LFRELGVLYS
181 ARALGRAADL PPAAQYADYA VWEAGQAGGP VFEAQLAHWR DRLSGHLGEA GIPTDRPRPL
241 RASTLGANVP VPAPADLRAR LRSSLGGASL FTGVLTALAV LLHRYGGRDR VVVGVPVINR
301 TREDWESALG FFANTVALRL DLSDNPSLGA VADRVTAETL DALSHQHVPF DRVVDALDAH
361 REAGMNPVFQ VMCSVNEVTA PPELVGLEPT LRSLDNDTAK FDVEFAVEFS GDHVDCRFEY
421 ATDLFDRPTV EALARHYRLV LDALLADPST RVGDLVLATE AEATAVLDGE PVVLRDRYGA
481 PVPVGVPGRA GDRTARLRRD GVVELLAEPD SAGAHGSAAL DGDGPDGGGP AAGVLAEPVT
541 PTERALAAIW EEVLGLARVG RDQHFFRGGG GDSMLATKVV VRVRRLWSVR VTVRQMLQHP
601 VLSDLAAHID SLAPRALPQA PAVEPGPVAD TPLSHAQQRL WFLEQLEPGG SAYTIAELLD
661 VTGPLRADAL ERALNAVVAR HDALRTTVAE VDGVPLQRVA PSVVVALPVV DHTSPERALR
721 EAWRQADRPF DLAAGPLVRA TLHRVGPERH LLALSWHHLV FDGWSQDLFL RELGAFYARE
781 TGADVPVPPA PAVQYADYAR WQRASLRDAE LTRLHDYWSA ALADAPTLLE LPTDRPRPAT
841 RGTAGSSRDL LLDAELARGL RDVARHHGVT PYLVLFAAFN ALLARHTGSE DLVVGGTTAN
901 RDTPEVEGVI GLFVNTLALR TDLSGNPAFG ELTARVRDTV TGAYAHQELP FEQVVELLRV
961 ERSPSRTPLF QVLFDYQENS WSELELPGLE VRRARGEDSS AMFDLTLVVI AGPDGLHCDL
1021 QYATDLFDEG TALRLLARWE ALLRSVVRTP DARLHELELL PPDERALVTG TWCSPRAVDR
1081 APGLVPERVA AVPPDATALV RGARSMTYGE LNDRAARLAA RLAGLGVGRG DRVLVCAPRG
1141 FDYVVASLAA MRAGAAYLPL DAATPAARVA HVVARSTPKA VLVTPGTRGL VEHPAVLEIG
1201 ADHGVPPAPI VPVGPGDAAY VIHTSGSTGT PKGVQLDHGG LAHRVDWYTA DCGLTARDRV
1261 SQIAGTAFDV SVLEIWTALS AGARLHLADD DTTASGEHAV RWLAEHRVTV AFLPTPLCEL
1321 ALDLPWPEDS PLRVLTTGGA ALRKRPRPDA PFTLLNLYGP AEATVVAVSA AITPDGPRVP
1381 PIGVPVPGAR ALVLDRHLNP VGVGVPGDLH LGGVGVANGY VGRPDLTADR FGPDPLGGGD
1441 RLYRTGDLAR WLPDGTLEYL GRLDDQVQLR GFRVEPGEIA AVLLAHPDVA DAVVVAREEP
1501 GVGTFLVAYV VPAAGPDGAG PDGAGPDGAG PDGAGAMPEA ANALRAHLAT QLPDYMVPTT
1561 TVFLPELPLN RSGKVDRAAL PVPTRGGVDH VPPRDDLEAA VAGIWRELLR VDRVGVHDDF
1621 FALGGHSLLA TKVVSRIRSE LSVSLPVRQL FETGTVARLA AVLADARAEP GAGEPAVVRR
1681 ERRLHRPPVN P
//