LOCUS ACU38289.1 2847 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 Acyl transferase protein.
ACCESSION CP001630-4315
PROTEIN_ID ACU38289.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_4443"
/inference="protein motif:PFAM:PF00698"
/note="PFAM: Acyl transferase; short-chain
dehydrogenase/reductase SDR; Beta-ketoacyl synthase; KR
domain protein; NAD-dependent epimerase/dehydratase;
phosphopantetheine-binding; KEGG: eca:ECA0602 type I
polyketide synthase"
/transl_table=11
/db_xref="InterPro:IPR000005"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR006163"
/db_xref="InterPro:IPR013968"
/db_xref="InterPro:IPR014030"
/db_xref="InterPro:IPR014031"
/db_xref="InterPro:IPR014043"
BEGIN
1 MGWRMSTSSK GDRAVAVIGL SCLLPGAPDP ERFWRLLAEG RHAVVDGPDG PAGVVGGTDR
61 FDADFFGVPP REAAAMDPQQ RVLMELAWAA VEDARLLPAA LRGGRTGVFV GAMADDHALL
121 AARLGPDAVT RHTLTGVSRA LLANRISYHL GLCGPSLTVD SGQSSSLVAV HLAAESVRRG
181 ESRLALAAGV NLNLAPDSTV RARRLGALSP DGRSFTFDAR ANGYVRGEGA AVVLLKPLAD
241 ALADGDRVRA VLLGGAVNND GAGENLTTPT ARGQRAVVER AHRDAGVDPA EVAYVELHGT
301 GTRVGDPVEA AGLGAAFAGR REALPVGSVK TNIGHLEGAA GIAGLVKVVL ALGRRELPAS
361 LNYATPNPDI PLGELGLRVQ HEHGALPARG RVVAGVSAFG MGGTNCHVVL ATAPEAVEGA
421 VAAPGGAALG EVAPEAAAGA DAAAGADAAG AGAAGAVASG AGLTPGGAPA GGGAAPVAAV
481 AWPVSGASPA GLRAQAAALR AHVDERADLT PEDVGFSLAT TRTHFRHRAV VVGRSRAELL
541 SGLDALRADL PAPGVVLGEP VDPEGGAPGS ATSRPTAPGG AVLVFPGQGA QWPGMAVALR
601 AESRAFAAAL DDCADAIQPH VDWSVADVLR AAPGSAALDR VDVVQPALFA VMVSLAALWR
661 DSGVRVDAVI GHSQGEIAAA VVAGALSLAD GAAVVALRSR AIAGMAGSGG MLSVPLPARR
721 VRADLADLAG AVGVAAVNGP ASTVVSGDAD ALRSLLARYT ADGVDARTVP VDYASHSAHV
781 EVLRERLLTE LAGVSPRACG TPFYSTLTGD LLDTTALTAD YWYRNLRGTV ELDRAVRAAL
841 RDGARAFVES SAHPVLAHGI GQTVDDTGST ALVTGTLRRE QGGSDQFLRS LARVHVRGGV
901 DWADFHRSTG ARAVDLPGYA FQGERHRLGG DALPAVTAPS GASARDEAAP TTDQPPVDVT
961 AAVRASAAAV LGLPSPDAVP LDRTFKQLGL DSAGAVEFRD LLAATLGRRL PVSLTYDHPT
1021 PERVVGSLTG TTTTGTTTRA GHARGDDREP IAVVAMSGRW PGGADSPEAL WRLAADGVDA
1081 ISPFPDNRGW DLARLHDPDG RRPNTSRTRE GGFLHDADLF DAAFFGLSPR EAAAMDPQQR
1141 LLLESAWELF ERAGLDPTGL RGSRTGVFVG MMPPEYGRRM HRTPGGHEGH ALTGSATSVA
1201 SGRLAYVFGL EGPALTVDTA CSASLVSLHL AVRSLRSGES AMAVAGGVAV MSAPGMFTEF
1261 SKQGGLAPDG RCKPFSAAAD GTAWAEGVGL LLLQRLSDAR RDGNPVLAVV RGSAVNSDGA
1321 SNGLTAPNGP AQERVIRAAL ADAGLAPEDV DAVQAHGTGT ALGDPIEARA LINTYGDRPE
1381 GRPLLLGSVK SNIGHTQAAA GVTGVIVAVQ ALRAGLAPGT LHLTGPTPHV DWSAGSVLVP
1441 AATTPWPEVD RPRRAGVSSF GISGTNAHVI VEQHVEQHVE QHVEPAAQPP VTQPPVTQPP
1501 VTQPPDEGGA GRSGAGEAGA TSPDPGGLTA PLPWVLSGRD PAAVRAQAAA LADHVAARPD
1561 LRDADVALAL ATTRARWDHR ASVVGVDRAE LLTGLRALAD GGAGVTEASG AAPLVHLFSG
1621 QGAQRAGMGE RLHRAHPVFA RAWDDAVDAI DAIDAVDAVD AESAGRPATP VREVLWSGGD
1681 LVHRTDYAQA GLFVLQTALF RLFESWGLRP ELLIGHSVGE IAAAHVAGVL DLPDAARLVA
1741 ARGRLMAQLP QGGAMIAVEA TGDELAEAVH GEPLLSVAAV NGPRSCVLSG AADRAEAVAE
1801 RFTRFGRRVK RLRVSHAFHS PLVEPVLDRF REVLADLRYA PPGLAAVSTV TGGPVRDEWS
1861 DPEYWARHVV ATVRFHQAVS GLPGAPAFLE IGPDGVLTAQ VDAILDGARP AVPALRAGQD
1921 EERAVAGALG ALHAAGRSPD WAAVRGPGRR PVDLPTTVFA RKRFWLADVD APGGDDHPLL
1981 PGVVRLADGG LVLTGAVSLG AAPWLADHVV LDRVLLPGTA FAELALRAAD VAGGCEVGEL
2041 TLHTPLPLDR GVTTELQVAL SPPDDTGRRE LRAHSRTGDG EWTGHGSGHL APARPAAQPT
2101 APAPGGQWPP PGARPVDLVA LRAALPEGGY HYGPAFQGLV ALWSRDDDLF AELSAPERDD
2161 GYGLHPALLD AALHPLVAAG LAEDATARLP FAWSGVRLHR RGATALRAHL VRGGAGGAAT
2221 TVTITATDEH GDPVLTVDEL RLLPVKTTGA RPAVPHVLRW LPAAPGAAPG RVTTVDLAES
2281 GPDEVTAGAR AGRVVLDARG LAGGDPVVGA HRAVAAVTDA LRRWLALDPP PAEPLVVLTG
2341 SASAAAPGDD PDLATAALAG LLRSAQAEHP GRLALLDVDG HPDSAAALPA ALGAAEPELA
2401 LRRGALLAPR LARRTGGTHT PFAPDPDGTV LVTGGTGALG ALVARHLVAE HGVRHLLLTS
2461 RRGPDAPGAV ELVAELTALG AHVRVAACDA ADRPALAGLL DSTPTAHPLT AVVHAAGVLA
2521 DGALTTADPR DTEAVLRAKV DAAWNLHELT ADADLAAFVL FSSAVGVLGN PGQSGYGAAN
2581 TFLDALAVHR AARGLPAVSV AWGLWSAGMA DGLSATDLAR LARRGLAPTP VAQALAHFDA
2641 ALGSDAPAVV AARLDLSGWT PEHGPPVLGD LASAGGAPAP AAPARPLAAQ LATLSAEEGH
2701 RLVLDLVLRT AADVLGHHDP GAVKPHVGFL AAEFDSLSAV ELRNRLAALT ALRLPSTLLF
2761 DHPTPDAVAA HLRAELSGGP EPDLLAELDR LEGAFRALED GTGGDRAAVA DRLAALLDRV
2821 GGGGALVVAQ ASEDELFALI DEELQLP
//