LOCUS ACU37939.1 1934 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 Erythronolide synthase protein.
ACCESSION CP001630-3965
PROTEIN_ID ACU37939.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_4083"
/EC_number="2.3.1.94"
/inference="protein motif:PRIAM:2.3.1.94"
/note="PFAM: Beta-ketoacyl synthase; Acyl transferase; KR
domain protein; short-chain dehydrogenase/reductase SDR;
KEGG: mca:MCA1238 polyketide synthase"
/transl_table=11
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR013968"
/db_xref="InterPro:IPR014030"
/db_xref="InterPro:IPR014031"
/db_xref="InterPro:IPR014043"
BEGIN
1 MSDERISVVG IGLRYPDAAT TAELWENVLA GRRAFRRLPD ERMNLADYHS PDPQAPDRFY
61 ATKAAVLRDF EFDRVRYRVA GSTYRSTDLT HWLALDTTAR ALADAGFPDG EGLPRRTTGV
121 VLGNSLTGEF SRANVLRLRW PYVRRTVAAA LAAKGWPDDE TADFLDGLEG RYKAPFPPID
181 EDSLAGGLAN TIAGRVCNHF DLRGGGYTVD GACSSSLLSV TTAAKSLVEG DLDVAIAGGV
241 DLSIDPFEVI GFAKTGALAT GEMKVYDRDS NGFWPGEGSG ALVLLRERDA LERGLRVYAT
301 ITGWGVSSDG KGGITRPEAD GHRLALDRAY SRAGYNLGTV SYFEGHGTGT ALGDATEIEA
361 LSSARRAADP TAPPAALGTV KGNIGHTKAA AGVAGLIKAV LALHHQVIPP ATGHHDPHPK
421 LDGAAVRVPL TAEAWPGDRP LRAGVSAMGF GGINTHIALE AAPGTTRRAG VDERAAALVA
481 SRQDAEVLLL DAADRDGLAE RVAEAAALVP KLAMAELGDL AAALAARLTG GPHRAALVIT
541 RTEDAARKLD RVRAALAEGT PLFDTADGVF LGEGTAAPAL AFLFPGQGSG KGGDSALRRR
601 FASAEEVFRS AGLPEGGDQV ATEVAQPRIV AGSLAALGVL RELGVEADRA AGHSLGELTA
661 AHWAGALDAG RVLSLATERG RVMAHAGRGG GAMASLAAGP DRAAGLAAGE DVVVAGFNGP
721 DQTVLSGPAD AVDRVCAAAR ARGVHATRLP VSHAFHSPLV APAADAMAER LVDYDFGRLI
781 RPVHSTVTGA PLAPDADLRA LLREQITGPV RFQEAATGLA EHADLVVEVG PGRVLTGLLA
841 DIAPGTPALS VDADSASLAP LLTVVAAAHA LGAPIRTAPL FADRVARELP LDGAMTFLAS
901 PCETAPPLDP ALRTTTSAAQ AAPGTTAQAE GESTLDLLRR LAAQRAELPL EALTEHTHPL
961 DDLHLSSITV GQLVNEVTRG LGRPALETSP NFATARLGEL ADLIDELAAT AHDGDRQDGE
1021 APGVAPWVRP FRVVHVERPL RPVQVAEPGD WTVHAPDGHR LTTHLEGALP GDGVLLLLPP
1081 EGGPEHVALA LTAARDALAT GRRFALAQGA LGMSGLARTL HLEAPHLPVT VVDLAAGLPD
1141 HAAAAAVVAE IAAGEGFTQA RYAATGARTV PVLRVAEPPA PDAAVPAASP LGPDDVLLVT
1201 GGGKGITAEC ALAVATDTGA ALALLGRADP ADDAELAANL ARMTAAGVRH RYERADTTDP
1261 DQLAAAVTRF RADLGDVTAV LHGAGRNEPT ALPNLTEDAF RATLAPKVDG LRAVLDVVGE
1321 PNVRLLITFG SIIGRAGLRG EAHYATANDW LTELTTDFAR RNPEARALAL EWSVWAGAGM
1381 GERLGVVEAL MRDGITPIST DAGVAVLRRV LADPTAGPAL VVSGRAAGLP TLELERAELP
1441 LTRFTDRVVV HYPGVELVTE ADLSGGSDPY LEDHQLDGDL LFPAVVGMEA MTQVAAALTG
1501 RAGPPLLEDV RFLRPIAIRP GGALTVRLAA LATGPDTVEV VVRAEDTGFS ADHFRATVRL
1561 PRPDLPAEPA ATATATDPAA TATTVPTDPA LPPVPVDPVT ELYGGILFQG KRFQRLQAYR
1621 TASARRAVAE VATTSAATWF APFLPQERLL ADPGARDVMM HAIQCCVPDA VLLPQGVERL
1681 HLADPAARTG EYVVLDARER SQDGDSYTYD LDVRDPSGVL VERWEGLVLR AVRHRDGKGP
1741 WTPTMLGPHL ERALERVLGG SRAVVVEPDP AEGGERRAQT ALALSRALGA PVEVRYRPDG
1801 KPEVAGHAVS ASHGAGLTLA ATAPGGRLGV DVETAAPRTE DDWAALLGRA PLAVRDLLAR
1861 ETGEDPSVAG TRVWGALECL RKTGSTTQAL ALERVHPDGW VVLSTGDARV ATWTTTVDDR
1921 PEPVVFAVLA GQED
//