LOCUS ACU37758.1 1391 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 methyl-accepting chemotaxis
sensory transducer protein.
ACCESSION CP001630-3784
PROTEIN_ID ACU37758.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_3880"
/inference="protein motif:PFAM:PF03752"
/note="PFAM: protein of unknown function DUF312; KEGG:
hso:HS_1058 large adhesin"
/transl_table=11
/db_xref="InterPro:IPR000408"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR005506"
BEGIN
1 MFALLRSAGV VVSAQAEIAL LGSDEDVRRF LTEALPLAQE SDDRIAAQRM LSTGGPSTRD
61 AANRALSGSI TDVRAFLVTG WKAPWREDLR IQVQRLLNSA AGPTVRQFAN DALNGGETEL
121 LAFLETRWQF ARNDDDRIAA QRILNTGGPA VKRAANLALS GSIEDVREFL ATGHAVAMQR
181 DQEVTSVAQL ATAAQNASAR ADAFRQTAED EAGKAVTAAE NAKRAAQTAA EETRQAKGSA
241 IVAAAAASRA ADAANRAADA AQVAINAIGQ AISAAGEAAN AASQAAWAAS KAGDAASRAR
301 EAAANVSAGR APAEQAATAA KSAAEAAQGA KDVTNAIVQA ILAAQRLSKI ADSLTSVSDN
361 VTAASNAAGE AEQWAGQSGV AAGAARSAAA RAQRNATEAA RAAGVARSLA TEAASQAEKA
421 RQASVDAAVH ASNAAAAADE AARQAGQANE AAARAQAAAD AARQASDTAR NAADQAAKTA
481 EIARKADSER LTANTNQAVR DAQDALQAET DALRTQVKQW EAGKVYRPDT DTQGLLDKAR
541 SAGADGVPDG RKAALRLWRS AGPYTSDAAG SALSGDAAAV TAFVTSGLDA ALRQDDRLGA
601 KILGGNATGA SAVVAAFNAV TGTDEQATEF LRTGAYKGKD DEDRIAAQRI LNTGGPATRA
661 AANTALSGSI EDVRNFLAEG RYQAARDDDR IAAQWLVNSG GPEVKAAAQA SLSGPGSHVR
721 DFLRVGQHKA AQRDAENAHH VAIVNGYVAA AGQAAATASQ HAANSAQSAA TARGAAAEAD
781 RWSDEARNSA ARAKVYADQA AAAAEQASGS AARAAQSART AQAAAATTRD YADAANRSAA
841 QAGLSAVQAS KSAGEARESS DRAQVDAQAI GKAYDQALLA RYEAEWALAE KKDLAGARND
901 MRDSKAAITK LRDNVEHALK NTGLPDETRR QLEETLGKLT HLLDLLGKGA SADLNVVKSA
961 LADIVAFGAQ SRITLPDYPE AIPDEVRKAD VGVRKEWLYQ RWLTLRDAPN QAEKAARFGA
1021 AYCTEFINDG ACSAEVASLG EYAFEVALLL FPYGRLAKWV GETGYTALAA RGAFGKALQE
1081 AALSSKFLPG VPVGSRALAV LPAVERANSR AAACLPGNSF TEGTRVLMAD GSAKEIERVD
1141 VGDVVAATDP ETGVTGTRRV TTTIVGTGVK HLVDIVVATD GHGGTAVITA TDNHPIWVDD
1201 RHAWIGAGQL TAGDQLRDHD GGGHTVRKVV PRTEVATVRN LGVADVHTYY VLAGDTTVLV
1261 HNEGCQTWPN LMKNSLDQEL AFADRLGVKP AAPGTAAFDA ALSTGETVKW AVRLDGSLVI
1321 VPKNVVGAGE ISHTVLTRGE SVLAAGEASI VGSADAGYFG LEITRHSGHF QPGPETLQIG
1381 LDAFAAAGVK F
//