LOCUS ACU37619.1 1017 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 putative PAS/PAC sensor
protein protein.
ACCESSION CP001630-3645
PROTEIN_ID ACU37619.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_3736"
/inference="protein motif:TFAM:TIGR00229"
/note="KEGG: met:M446_3626 signal transduction histidine
kinase; TIGRFAM: PAS sensor protein; PFAM: Stage II
sporulation E family protein; GAF domain protein; PAS
fold-3 domain protein; Sulfate
transporter/antisigma-factor antagonist STAS; PAS fold-4
domain protein; PAS fold domain protein; SMART: protein
phosphatase 2C domain protein; PAC repeat-containing
protein; GAF domain protein; PAS domain containing
protein"
/transl_table=11
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR001610"
/db_xref="InterPro:IPR001932"
/db_xref="InterPro:IPR002645"
/db_xref="InterPro:IPR003018"
/db_xref="InterPro:IPR010822"
/db_xref="InterPro:IPR013655"
/db_xref="InterPro:IPR013656"
/db_xref="InterPro:IPR013767"
BEGIN
1 MAHLGVDRTL LSLAPEGRTL LGLSAGEDLG ALPESLREAV DGAAEEGAWT GVGELAGVPV
61 RVVCVALGEG YALVATPLAA GVDASGDTPT ADVRIHTTPD TNFDPFEARG EVPGEHLRGL
121 VDALSVVVWA ADATTGRYTF VSRHAERLLG YPVERWLGEP AFWESVVHPE DRAAIADRDV
181 EGLSDYELDY RAVAADGRVV WLHDLVRVAR DERGEPTALH GVLVDTSPGR AAEARRRFLA
241 GLEERLQRLE DAGEVMTAAT RLLGEHLGAD RCAYAESESD QDHFTMSGDH ATGLPPLTGR
301 FAMSSFGRDA LLAMRAGEPW VVRDSEDDPR LTAEDRAVYR RTGIRAVICL PLLRGGRFAA
361 ALAVHQAVPR RWTAAEVELV SVAANRCWES VQRTHADRAL RESELRFRQL VERATDGIWV
421 VDRDLRFVEV NPAACALLGH AREDLLGKPV AALLGSERGE RLAALLGDEG EPDVVTEVWQ
481 VRRADGGAVA LELSIQATPT GLQAIGRDIT ERQRAEAERE ALRHREHEIA EALQRSLLPR
541 ELPALPRLAA AARYLPASAH TQIGGDWYEV LPVGETTVAL SVGDVVGKGP QAAAVMGQLR
601 SALAGYLLDG HSPAAALERL DAFALRTRGA PGSTCACLTL DWSTGELSWA SAGHPPPLLV
661 EPERSRFLPI GTGTVLGVPG RAAYRDSQVV LPAGGTVVLY TDGLVERRGA LIDAGLDALL
721 RLVRGEHELG PDELADRITS ALLDGGQDDD VALVVVRKIP EPLRRRVAAE APELSGMRRR
781 VAEWAGRAGL SDDLLCDLQL ALGEAAANAV DHAYPDGPGE FEYAVERVGD GGVRVRVRDW
841 GRWRPEPEDK GHRGRGVQLI RSVGRDAVFA RGPEGTAVEF VVPEGDGPGV PAPRRRVRGP
901 VVGVRCTAGE EFRDAVQVLH LGGDLDLDGV RALREFLLGR VDVADRRPVE LDLSGLGYLS
961 SSGVALLLEA AEVAAGRGRG VGVVVTEGSA PARIMAVSGL HGGAAGDRLS LRVVPPR
//