LOCUS ACU37559.1 2619 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 amino acid adenylation domain
protein protein.
ACCESSION CP001630-3585
PROTEIN_ID ACU37559.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_3675"
/inference="protein motif:TFAM:TIGR01733"
/note="TIGRFAM: amino acid adenylation domain protein;
PFAM: AMP-dependent synthetase and ligase;
phosphopantetheine-binding; Non-ribosomal peptide
synthetase; condensation domain protein; KEGG:
psb:Psyr_1792 amino acid adenylation"
/transl_table=11
/db_xref="InterPro:IPR000873"
/db_xref="InterPro:IPR001242"
/db_xref="InterPro:IPR006162"
/db_xref="InterPro:IPR006163"
/db_xref="InterPro:IPR010071"
/db_xref="InterPro:IPR013624"
BEGIN
1 MAELDRDRVL LGASTAEEVE LRRRIAALPP ERRALFEEAL SAGLAESGPP GRPAVAGGPV
61 RPSFGQERMW VLSRLTPVAY NYATAVRLRG RFNPVALRAA VDAVARRQES LRTSLVHAGD
121 GGLVCSVAER VAVPLRIVDL GPAGDDGLLE RLVTAEIGSP FDLAQGPLLR SAVFRLGPDD
181 HLVLLTAHHV ITDGWSNGVL AQDLSQGYRD LVAGHPVRLP MPELGYRDFA AWQRNRAEGP
241 QSRELTDFWR ERLVDLPHTE LPLDRPRPAT GRGAGANHSL VLGPDLAAGL ERLRRENGGS
301 LLVLVLTALA VVLRAMTGQG DLALGTLVSG RSRPEFQRLV GYFVNVVLLR LSAPEGASFR
361 ATWAGVREAV RESLAHQELP YEKLLELHRE SGRSGNPIRV LCVAQQARPS LELPGLDVEQ
421 LEVEPGAAQY DLLVEVGEDA SGVRISCQYD VDLFTGATVR QLAEHLRTVL VGAVQGADRT
481 GAELLAEPSG RAAPTAAPPA AESVSALFEQ QARRTPDAVA LHDGPHAVTY RALDRRANQL
541 ADLLAERGVA PGDRVACCLP RSTHSVLAAL AVLKLGAAYV AVDPRQPAER IGGILADARS
601 RCALTTAEFS GVAAVADVPL VVLDEVGGEL AGRSAHWRSR PVHHDSVAYL VYTSGSTGAP
661 KGVLGTHRGL VNRIRWTQRA YPTGDAEVWA ARTSPGFVDA VWEIFGPLLS GVPLVLVGAA
721 DTADPARLVE VLATWRVTRL VAVPTLLRIM LEDRPDLERD LPLLLTWVSS GEALTTELAE
781 RFHRGLPGRR LLNLYGSAEV AADATAFEVA PGCANHPAVP IGAPLDGVDV EVLTPSGVPA
841 PPLGVGELHV GGAGLALGYH CRPAETAARF LPAPGADRAG RRRFRTGDQV RRRVEGGLDY
901 LGRLDSQVQI RGHRVEPGEV EGVLREHPRV REAAVTARAD AIGDLSLVAY VVTADDTGQA
961 DDLTAFLRRR LPPYAVPSAV VRLPELPLNA SGKVDRPRLP HPGPERDRPA PVRPGTPLEA
1021 AVLDVFEDVL PVAARPRASD DFFLLGGHSL LAAHVAALLR ERLGVEVSLG DLLAAPTAVG
1081 LATRLEHAAA PPEARTASGP AARIAPDPAA AHEPFPLTEV QRAYLVGRDA EFDLGEVATH
1141 AYLELNAAGL DIDRFETALN EVIGRHPMLR AVMSHDGTQR VLESVPRYLV AHQDLSRDDS
1201 SARRRRLLRW REELSHQVLP ADRWPLFDVR VSRLPGRDAV VHISVDALIC DAYSFGLVMT
1261 ELADRYAGRG GAHPPLGLTF RDYVLAQERR RREPAHEKAL AYWRDRLAEL PAGPELPMAT
1321 SPEHVDRPRF ARRSGRLEKS DWSALKARAA ERGLTASALL LNAFVEVVTR WSRRPHYSLV
1381 LTVFQRESAH PEVGGLVGDF TSLSVLEVDR RTRSTFAEHA HALQRRLWDD LDHAQVSGVE
1441 VMRWWNRERG LPPGALTPVV FTSNLPVGGA PRPEAADSPF GEVGFAITQT PQVHLDHQVG
1501 EQGGALVFNW DSVDELFSPG VVDGMFDEYR RLLGALVEDE SGWTAPLEAA LPAAQAATRA
1561 GVTVESDAAP PRCLHEAVLA AAERLPDHVA VVDGLTRTTY RDLVARAHRV ARTLLARPGP
1621 RQTLVGIAIR KSWQQVAAAL GVVEAGMAFL PLDVDLPPAR LRHLVERGEL RTVLTAGEDA
1681 RRLPLPPDVL VVDLDDDAAL DPSTAPPLVP VDPADLAYVI FTSGSTGTPK GVMIDHRGAA
1741 NTVDAVNGRF GIGPEDRVLA VSSLSFDLAV YDLFGLLAAG GTVVLPEHGK RRDPAHWSDL
1801 VRRERITVWN SVPALAGVLA DHVELLAPDA LASLRLVMLS GDWIPIALPD RVRALAGRAT
1861 VLSLGGATEG SIWSVWYPIG EVDPAWPSVP YGVAMPGQSA RVLDEDLRPR PDWVVGELFL
1921 GGQGVALGYW RDREQTDHRF PTDPDTGGRL YRTGDLARHL PDGNLEFLGR EDGQVKVNGY
1981 RVELGEVETA VQRLPGVQAA AVVAAGEPGA DRRLVAFYVP EPGFEPDPVG LRPRLGEALP
2041 GYLVPALFRP LDRIPLTPNG KVDRSALQER VADRGRPAPA ARPATPARGT RLHEGIGAIW
2101 AELLSVPEVR PQDDFFALGG TSLQAIRLVA KVREQLGLRI RLNQLFENPT PAALADAVTG
2161 AQSGEGPEPG ALPALAPSPG DRYEPFPLTD IQHAYWLGRR AGLGLGGVAT HGYVEMDVDD
2221 LDLGRLERAL RVLVDRHDAL RTVVRRDGTQ QVLKTVPGYR IETADLRAQP SEAAAERLAE
2281 VRAEMSHQVR DAGSWPLFEL RAHRLDDLVT RLHLSIDLLI ADAHSSRILT GELMAAYQDP
2341 AATLPEPACT FRDYVVAVAE LKRGSQHRQA LDYWTGRLAE LPPAPGLPLA RRPEELTAPR
2401 FHRVHAELPQ DRWRAVRDWA ASTGLTPSAV LCTAFSEVLA RWSDSPRFTV NVTTFNRLPL
2461 HPDVDSLVGD FTTTTLLAVD GARGATFAAR ARHLQERLWQ DLEHRLVSGV DVLRMLRRRP
2521 DRRDEAMMPV VFTSTLLPGD ALPGAGAPAW RARTVHAVSQ TPQVLLDCQV GEQDGTLLCA
2581 WDFVAEAFPP GLVESMFDAF TTVLDALVET AVRTGGDLE
//