LOCUS ACU37109.1 3148 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 Acyl transferase protein.
ACCESSION CP001630-3135
PROTEIN_ID ACU37109.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_3198"
/inference="protein motif:PFAM:PF00698"
/note="PFAM: Acyl transferase; short-chain
dehydrogenase/reductase SDR; Beta-ketoacyl synthase; KR
domain protein; phosphopantetheine-binding; KEGG:
mxa:MXAN_4527 polyketide synthase"
/transl_table=11
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR006162"
/db_xref="InterPro:IPR006163"
/db_xref="InterPro:IPR013968"
/db_xref="InterPro:IPR014030"
/db_xref="InterPro:IPR014031"
/db_xref="InterPro:IPR014043"
BEGIN
1 MTTREQLLDA LRASLRENER LRATGGAAQP VAIVGAACRF PGGVTSPEEL WDLVVGEVDA
61 AGPFPDDRGW DLADLFDPDP DRVGRSYVRH GAFLRDMAWF EPGFFGISPR EALVIDPQHR
121 LLLEVAWEAF ERAGIAPDSV RGRDVGVFGG VLNHDHGSRF RPVPPELEGY LGTGSSGSAA
181 IGRVAYTLGL EGPAITVDTA CSSSLVAIHL AVRALQRGEC SMALAGGVTV MSTPDTFVEF
241 SRQRALARDG RCKAFSADAD GTAWGEGAGL VLLQPLSAAR RDGRQVLAVV RGSAVNSDGA
301 SNGLTAPSGP AQQRVIRAAL ADAGLSAADV DLLEAHGTGT VLGDPIEAQA LLETYGRARA
361 DAGPLWLGSV KSNIGHTQGA AGVAGVLKVV QALRNGVLPP TLHAATPTTE VDWDAGAVRV
421 LDRARPWRGG GEPGGARGGA AGGVEGGAAG GAPGGAAGGA AVRPRRGAVS AFGASGTNAH
481 LILEEAPAVE AGALGATGAL AATGASGVTG ALGATGASGV TAAGTSTATA AAPGEELGAT
541 LGGAVAGGAE AAPPPASPPP AALPPAAFPP AAFPLGGPPA GAPAAVPSAS LPAAASDAPA
601 PAPAPVPVPV PVPVAVSGAT TAGLRAQAAR LAGHLRERPA LGPEDVARPL LLSRTQRERR
661 AVVVAADRDS LLTGLDALAG GEAGPRLASG AADVTGRVVL VFPGQGAHWT GVAERLWREA
721 PVFADSMARC ADVLRDLAGW ELREVLVDPV ALERVDVLQP VSFAVVVSLA ALWASVGVRP
781 DAVVGHSQGE VAAAHVAGAL TLAEAARIVV LRSALIAREL SGRGAMLTVV ADVERVTALL
841 TGFEGRVCVA AVNGPASVTV SGEDGAVREF ERVLSARRML RWRLPGVDFA GHSPQVDALR
901 AELLAALGDI ASREPEIPLL STVTGEPATR LDAEHWYRNL REPVRFADAV TALLDRGHRV
961 FVEVSPHPVL TTSVVDLAAP HRTAVVGTLR RDEGGLDRFL LSAAELHVRG VPVDLARHAG
1021 AGTAEVPTTA FQRERYWLDA PRQSGDARAA GLVPSGHPLL GALVPLADGT VLTGRLSLSA
1081 QPWLADHRVL GAVVVPGVAL VELAVRAGDE VGCPALEELV VAAPLVVPES GDVAVRVVVG
1141 PRGADGTRPV DVLSGDESPV LHARGVLAPP RAPEAVGGQW PPAGAEPVDL AGLYPDFAAK
1201 GLEYGPHFQR LTRLWRRGDE VFGEVELTGE QRRAAGFALH PALLECALHV SSFAGQRVAG
1261 DGGAVGLPFS FSRVALHRSG VDAVRVRATR VGDGVVSLAL ADGAGRPVAR IGELAFRRAG
1321 GIRSGPPGVL LETAWRPVEL PEARPAADVT TVVGDSVERV LAALREILAG DGRLLVLTGG
1381 PGAPIGTAVG AAVWGLVRSA QLEEPGRIVL ADLDTTPERA APALRRVLAS GEPQVSIRDG
1441 AVLVPRLTPV AAVARPAGLD PAKTVVLTGG TGALGRLVAR HLVTDHGARK LLLLGRGGPE
1501 RARDLVAELT GLGAEVEALA CDVADRDALS AALAGRALTA VVHLAGALDD GVVTALTPER
1561 LAVAFAPKAL AARHLDELTR GQDLAAFVLF SSAASVLGSA GQANYAAANG FLDGLAHERH
1621 ALGLPATSIA WGLWDVDSAL VGERGAADRE RLAASGMRPL PAPAALDLLD AALACGRPAV
1681 TALALARAAD RAPAALSEVV APRRTPAPAA PVAGDPAALL ALVRAEAAAV LALPVAGVDE
1741 RRAFRDLGLD SLTGVELRNR LAEATGLRLP ATLVFDHPTP VELAAALLER VGGATGPAGG
1801 RPGATAGAGP AAALGAGPGT APAPGEPIAI VGMACRAPGG VASPEDLWDL VAGGVDAVGP
1861 FPADRGWDLE RLVHPDPDHE GSTYVDRAAF LDDPAGFDAD FFGISPREAL AMDPQQRLLL
1921 EVAWEAFERA GIAPDSVRGT DVGVFAGVTN HDYDQVLPRG DDGYRITGVS GSVVSGRIAY
1981 ALGLEGPALS VDTACSASLV AIHLAVRALR GGECSMALAG GATVMATPRG FVEFARQRGL
2041 APDGRCKSFA EGADGTAWSE GAGLVLLERL SDAQRNGRRV LAVVRGSAVN SDGASNGLTA
2101 PSGAAQQRVI RAALADAGLS TADVDAVEAH GTGTRLGDPI EARALVATYG RDRDGEPLWL
2161 GSLKSNLGHM QGAAGIGGVV KTVQALRHGV LPRTLHVDAP TPEVDWEGVA VLAEQRAWPE
2221 VGRPRRAAVS SFGVSGTNAH VVLEQAPAEI VAETAVETAD RAQDLPGVLP LVLSARSPAA
2281 LRAQAARLAD VLDDLPLRDV ASTLARGRAA HEHRAVLVAA DRDALRAGLR ALAGGRPHAA
2341 ARTGVRAPGG LAFAFSGQGS QFVGMGRGLH AAFPAFAEVF DRVCAALDER LGDLTGRSVR
2401 DVVLDGPAEL LAETVHAQPA LFALEVALAR LLERWGVVPD VVLGHSVGEL AAAHVAGALS
2461 EADACALVAA RARAMHGARR GGAMLAVAAT EEQVAPLLGG GLALAAVNGP GAVVLSGDGD
2521 AVERAAAECA GRGWRTRALR VSHAFHSAHL DGVLGELALA ARRVEVLPPR VPLLSTLTGA
2581 PADAELLADP DYWVRQARHA VRFGDGVARL GELGVTRVLE VGPGGALAAL VREQVAPGTA
2641 VARGLVDGDE VVGLLSGIGD LVASGTPVDW TALLGGPGAV ADLPTYPFQR TRFWPVAQAA
2701 GAWCEVRHER LPAPRGDGSA TVLEVGPTAS AEELAGVADV LAGHGGPLLV VTGDGAVAGL
2761 VRSLPDRADV VLADVDDDPA SVALLPALHG CGEPEVVVRA GEVLAPRLRR VTATSAVPAG
2821 PVLVVGEAAR GVVAACGVRE PVVLPADPGR EELVAALEGH RPDWVVLAVE PDDAGLARAA
2881 LLDELTRDRP PALFALCGPA GALGDAARPE DAVAAGVLAA LVRRRHEDGL PATLLCAGPG
2941 VPPLSPELGV VVFARTSEAA LSGGVLSEGA LPGVALPEQR SAPEPSAVDL TGPDRDRVLL
3001 ALVRDHAAAV LGRADGSVDG RAAFRDLGFD SMTAVELRDR LAAATGLTLP ATLLFDHPTA
3061 AEVAAVLAGL LDGGDPVTSG LDRLEAALAD PPADPALRAS AAARLRALLA ALSDEDQGEP
3121 DGGAALRDAG VAELFEFIDT RLGRAERT
//