LOCUS ACU37108.1 4575 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 Acyl transferase protein.
ACCESSION CP001630-3134
PROTEIN_ID ACU37108.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_3197"
/inference="protein motif:PFAM:PF00698"
/note="PFAM: Acyl transferase; AMP-dependent synthetase
and ligase; Beta-ketoacyl synthase; Alcohol dehydrogenase
GroES domain protein; short-chain dehydrogenase/reductase
SDR; KR domain protein; Alcohol dehydrogenase zinc-binding
domain protein; phosphopantetheine-binding; KEGG:
met:M446_0172 beta-ketoacyl synthase"
/transl_table=11
/db_xref="InterPro:IPR000873"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR006162"
/db_xref="InterPro:IPR006163"
/db_xref="InterPro:IPR013149"
/db_xref="InterPro:IPR013154"
/db_xref="InterPro:IPR013968"
/db_xref="InterPro:IPR014030"
/db_xref="InterPro:IPR014031"
/db_xref="InterPro:IPR014043"
BEGIN
1 MLRSDLIRPL PELLREHAAR RGDRVAFRDA RRAVTWADLE LRTRRLAGHL AARRLLPGDR
61 AVILLGNRVE TVECYLALVR AGAVGVPLNP VSTDAELGGL LDDSGARLVL TDAAHADQLA
121 GLRATRPALE VVHVDRDYEA LAGVDAPLPA HDALELDDLA WMLYTSGTTG TPKGVLSTQR
181 NCLWSVAACY APVLGLTPDD RVLWPLPLFH SLSHIAGVLA TTAVGATTRV VDGRSPQDVL
241 AALHEERSTV LAGVPTTYHH LVRAAGERGF LAPDLRVGLV GGAITTAELR AAVEQRFGVP
301 LIDAYGSTET CGSITVNWPT GPRVEGSSGL PVPGLAVRLV DPDTGLDAPT GAEGEVWVRG
361 PSVMLGYHNR PEATAAALRD GWYRTGDLAT RDESGFHAVT GRIDDVVVRG GEKVHPAEVE
421 AVLRAVPGVA DAAVVGRPHD VLGEVPVAFL VPGEGFDPAR VLAVCRERLS YHKVPEELYQ
481 IESVPRTASG KITRRVLLDT PARLRARGER GALFRTDWVP LTAAVGAVTA PGSAVTEPGA
541 ETTVGAATDP DAGSPAGAPT APVPAPGDAP VVLDLRGDDA PALSGRPDLV LTRGAVAVDG
601 GPVRLGQLAA WTAARRAGIT AVDTDDDAAV DPVALLAAGE PRLLVRSGVV LVPRLHEVPG
661 SVVGRGALDP RRAVAVTGAD SGTAAALARH LRGAHGVRDL LLITGPDGRA RAGALRDDLV
721 ASGARVVLAV AGPDALDRAL SRAPSPLGAL VHTGDGDPEA LPYLLGARVE LVVCATAFDS
781 AAAEDVVLRR RAAGMPARCL AWGPWEAEAA QARPGLAVLP LRDGLAAFDA ALGADEPVVS
841 VLRPDPDLVA GDVPAPLRDL LHVVAAEPEP VRVAELRAGL AGRGERERRR RLLDLVRAET
901 AALRPAEFVV DGHERGFAEL GFTSATSVAL RNRLTAATGL ALPATAAFEH PTPTALAALL
961 HDELFGASQS PEQAPVAPAR AVERSGEPIA VVAAGCRLPG GVASPEDLWE VVRSGSDVVS
1021 PFPVDRGWDL DALRGACAGG GFLADAALFD AALFGVHPRE ALAMDPQQRL LLEVAWEVFE
1081 RAGIDPRSVA GDGTGVFAGL MGHDYGSRPG LDRQLVEGYL STGNAGSVAS GRIAYAFGLT
1141 GPALTVDTAC SSSLVAVHLA VQSLRRGECA MALAGGATVM ATPADFVEFA RQGALAPDGR
1201 CKPFSASADG TAWSEGAGLV LLERLSDARR NGRRVLAVVR GSAVNSDGAS NGLTAPSGAA
1261 QQRVIRAALA DAGLSTADVD AVEAHGTGTR LGDPIEARAL VATYGRDRGG EPLWLGSLKS
1321 NFGHPQGAAG IAGLIKLVQA LRHGVLPRTL HVDAPTPEVE WNGVAVLAEQ RAWPEVGRPR
1381 RAAVSSFGVS GTNAHVVLEQ APAAPAAPAA PERGAVPLPV SAVDAAALRA QARRLADFLA
1441 PSDVTAAELA GALRAGRADL GERAVVVADD RAGALAALEA LASDEPSPAL VTGRADVTGR
1501 VVLVFPGQGG QWVGMGARLL DESPVFAELV DECAAAVDPL VDFRVVDVLR GGDLSRVDVV
1561 QPVAFVVMVA LARLWRSVGV EPDAVLGHSQ GEIAAACVAG ALSPADAARV VVLRSRAIAA
1621 GLDGGGMASI PLPQAEVEEL VAGTGVCVAA VNGPGSVVVS GDVDALVARV EGARRLPVGY
1681 ASHSPAVDVL REGLLADLAP ITPRPAEIPM LSTVTGTWLD GPELDADYWF ANLRHPVRFA
1741 DAAALLVADG FRAFVEVGAH PVLTAPVQDL LAGAGPSVAT GTLRRDDGGL DRFLRSAAEL
1801 HVRGVAVDLS PLAPPPVRAL DLPTYPFQRA RYWLDADPTA ASALRHPLLT SATDLAGGED
1861 LVCQARLSTA RHPWLADHVV RGSAVLPGTC WAELAIRAGD EVGAPALDEL LVEAPLVLPE
1921 RGAVEVQLRI GAPDAAGRRP LEAHARAEGG AWTRHASGSL AVDRSTPVPL TEWPPTGARE
1981 VDLAGFYDSR AAEGYGYGPA LRGLRRAWTR DGEVFAEVEL PEPLSPDGWG LHPALFDAAL
2041 HATGLLPPAR VAADEVLLPF SWRGTRLRAT GATALRVRLT GTADDHVLRA YDPEGAPVVE
2101 VDALRLRPAP ATALVGSGAL FRVEWVDLDV HGPTPGSEST TPVLDLPDGD ARALLGLTLE
2161 ALREHDELTV VTRGAAEDPA AAAVWGLLRT AQTERPGRFT LVDLDDDPAS RALLPALPAT
2221 GEPQVRVRAG RAGAPRLART RDDGLRLPAA PTWCLTCDGG TFTDLAATPS PAATRPLEPG
2281 EVRVGVRAAG VNFRDAAVVL NAVPGQRGLG GEAAGVVLET GPGVTGLAVG DRVLGTFDRD
2341 FGAFGPVAIT DARLLAPVPP GWGFARAASV PVAFLTALHG LRDLAQVGPG DRVLVHAGAG
2401 GVGGAAVRLA ALLGAEVFAT ASPAKWPVLR ALGLDDAHLA SSRDTGFAER FPAVDVVLNS
2461 LTGELVDASL RLLAPGGRFL ELGKVDVRDL VRADVAYRAY DLRDAGPDRT AELLAEVLGL
2521 FEQGRLEPLP LTVRDIRHAP EALRHVASGG HVGKVVLTVP RPLDPEGTVL VHGGGALGAL
2581 TARHLVSAHG ARHLLITSRR GPDAPGAAEL AADLAELGAT TRFERCDAAD RDRVAALLAD
2641 LGEHPLTAVV HTAGALDDAL LADQDAARVD AVLRPKLDGA LLLDQLTRDA DLAAFVLFSS
2701 AAGTLGNAGQ ANYAAANAAL DALATRRRSA GLPATSIAWG HWESASALTA GLTAADLARG
2761 ARHGAGSLGT TEALALLDAA LASPEPAVLA AALDPRRAAE VPPLLRDLAG PRRAVAAQAV
2821 AGADRPLIDV VRAHTATVLG HRDASAVDAH RAFKELGVDS LTAVELRNRL AAATGLALAA
2881 TSVFDHPTPA LLTAHLLAEL GHAPAAGTTA PATAVTADAG EPIAIVSMAC RFPGDVSSPE
2941 DLWDLVAGGG DALTPFPADR GWDLATLFAP DPDGAGRSHA RAGGFLADVA GFDADLFGIS
3001 PREAIGTDPQ QRLLLEVAWE LFERAGIAPD SLRGTDTGVF AGVIAHGYPV LPAHSDQGLE
3061 GHRVTGVSGS VVSGRVAYAF GLQGPAMTVD TACSSSLVGV HLAVRALRGG ECSLALAGGV
3121 TVLSTPDLFV DFSRQRGLAA DGRCKAFGAG ADGTGFGEGV GLVLLERLSD ARRNGHRVLG
3181 LVRGSAVNSD GASNGLTAPS GPAQERVIGR ALADAGLSAA DVDLVEAHGT GTRLGDPIEA
3241 RALVATYGRD RGGEPLWLGS VKSNIGHTQA AAGVAGLIKA VQALRHGVLP ATLHADEPTP
3301 EVEWDGVAVL AERRDWPEVG RPRRAAVSSF GVSGTNAHVV LEQAPEERVP EGRGPEREAP
3361 AGADDRDVPG HLPLVLSAHD PVALRATAAA LLPVAEHLPL PDLALSLVTG RAALPCRAVL
3421 PARDRDQALA ALRDLASGAT EPAGRDGGSV AFLLSGQGSQ RAGTGRLLER RFPVFRDALR
3481 EVCALLDRRI VGGPGVRAAL DDPGLLADTR YAQAGLFAVQ VALVRLLDAL GVRPDLLAGH
3541 SVGEIAVAHA AGVLSLEDAS TLVAARGALM RELPPGVMVA VRAGEDEVRA ALVDGVELAA
3601 VNGPRATVLT GDEAAVTEVA ARLGRATRLR VAHAFHSAAV DAVLPAFADV LARLDFRPPR
3661 VPVVATAPGA LDAPEYWLGQ AREPVRFADA VTDLHRRGAT AFVEVGPGGG LAAAAQECLD
3721 GHDVLCAPLL HRDRDEDHSL ITALGALHAR GARVDFAPLL ADAGGRTTDL PTYPFQRRRF
3781 WLDPAPPTTD AAPLEHPLLT GELEIPGSDT AAFTGRAATG AHPWLADHRL LDAVVVPGTA
3841 LLDLVRAAGR QLGLPEVAEL VNEVPLVLGD GAALLRVTAA APGPDGRREV AVHSRPESAG
3901 PRSPWTRHVT GQLAPDGGPL AFDLAQWPPP GAQPLPVADH RAAMAATGHG YGPAFLGLRA
3961 AWRLDDEVLV EAVLPDEVAD DGHTVHPALL DAVLQALSLT GVEDGSQVRV PFSWRSARGA
4021 GRAGRAVRAS LRPDGDGGVR VRVACPQGRP LLEIASLVSR PVTPDRLRPG VLLRQAWTEV
4081 GPPPGAAEPV PLREVGERVP PVVRVDAGHV RDLLPLLQEA VTEPRWESTR LLVTTSGAVG
4141 PRAGRAEGAA VWGLVRSAAA EHPGRFVLAD LDDRPESAAL LPALATGALP EAVLRAGRVL
4201 VPGLHRVAAP STGGTALDPG GTALITGGSG ALAALLAEHL VRAHGVRSLV LLSRSGRGPD
4261 VPGADVRHVR GDVADRADVV AALAAVPPDR PLTLVAHLAG VLDDGALTSL TPERLDAVLR
4321 PKAEGARHLD ELTRDRDLAA FVLFSSVAGV LGHAGQANYA AANAHLDGLA HERHALGLPA
4381 TALAWGPWTE GMARGRGGGL SPQVALGLFD AALRTGLPAL VPLDREPERR VPAPRAATPA
4441 PAGPSLADRL RPMPPAERRA HLLELVTAEA LGVLGHDDGA ALPAGQAFRD AGFDSITAMA
4501 LRNRLVRLAG VRLPASVVFD HPTPAATAER LEAELFPAEQ LPGPRHGDDF DDMAADELVR
4561 RALGGEWPTP LGGPA
//