LOCUS ACU36877.1 1339 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 transcriptional regulator,
putative ATPase, winged helix family protein.
ACCESSION CP001630-2903
PROTEIN_ID ACU36877.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_2956"
/inference="protein motif:PFAM:PF03704"
/note="PFAM: transcriptional activator domain;
transcriptional regulator domain protein; KEGG:
bpm:BURPS1710b_1102 putative lipoprotein"
/transl_table=11
/db_xref="InterPro:IPR001867"
/db_xref="InterPro:IPR005158"
BEGIN
1 MPSGAPLRVA LLGPVRAWLG ETEVDVGAAR RRAVFAVLAV RAGQTVARDE LVDGVWGDAP
61 PATAGASLYT YVSGLRRAFD PDRSHRAATG VIDSVGAGYA LRLEPDGLDV HRFEAHRERA
121 QELAAADPAG ALRELDEALG LWRGDALSGV PGPFAEAQRS RLAELRLAAV ERRAELALGL
181 GRHADVVAEL TALTADHPMR EGLRALLMQA LHRGGRQAEA LEVFRDARDA LVEQLGIEPG
241 PALRHAHSQV LGDHGSASDG AAWARGADLL PPRGSSWPGG DVSGGDVSGG GRAGGGPPGG
301 DAWERGGSGG NGRGRGGQGG GGWTGGGQGG GRWGGDARTG DGEAGADRAG GRRAGSGQAG
361 VGRAGAGQTG GGRAEGGRAE GGRAEGGQAE GGQAGSGRAG ASQAGGGRGS AGRAGSGFPG
421 DGSPGAGRAG SGRGSADQQG GGFRNDGSPG AGSPGAGSPG AGSPGAGLSG VARAGAGRAG
481 SGFLSGGAGD GLPGWSGVDA AAAGEHGVGR PALSTPTAVP RGFAGRAREL AALRAAVAEV
541 VAGRGGAVWV EGEPGIGKSA LLDVALDARD VQLGWARGDE LGGRFPLRVV LDCLDVSPCS
601 ADPRRVALAA ALDDPASWFG DPVAAAAERL TGFVAELCAA GPVVLVVDDA QWADEASVAV
661 WRRLLGLTGE LPLLLVAAAR PVPRRGDVDR VRRAAADRGG LVLGLGPLSE PEVAGLLAEQ
721 VGAAPGPELL RLAGCAGGNP LYVRELADAL VREGALERRG GVADVDDVGR TASPSLVAAL
781 GRRLSFLSDD ATEVLRRAAL LGDRFAVADV ATALGTPASG LLGPLSEATE SGLLVDGGEL
841 LAFRHPLVRQ VLYLGVPEAV RSALHRQAAR ALAEAGAAVA VVAGQIAAAP ELADDWVVDW
901 LTARADPLAA AEPEAAVELL RSVARQPALE PAHRERLLAA LARLLFLLGE RPDAEVRYVL
961 ARSRDADRIG EMRWMLARLQ NDDGEPGEAS RMLAEAIADP ASTPVWRARM RALLAVVHRE
1021 GLDDVVAAEA HALAVPPGDR FADGLALRAR WQVAMARRDH AGALARAEEG AALVAGDPVL
1081 VGLWHELVAD RAEALRALDR FADADAVLRA GRADAPGSLV HGAALVRAAE QDYWTGRWDR
1141 ALERAEDGVA RSGSRERGRV LLGRGIAALV RVRRGLPVRW DGAPPPVLPA HHEQADFLAV
1201 ARALAGSAPV PALVPLLRPR GLLARHRWMP LLTRSALVEG ARDVAERALR VCLDEGAEVA
1261 AAHCRGLLAA DPSEVLVAAG RYRAAGRTVD LAGALEDAAV LLGDEVRLAE AVEVYRGFGA
1321 EADARRARAR FGRLARGAR
//