LOCUS ACU36798.1 2144 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 YD repeat protein protein.
ACCESSION CP001630-2824
PROTEIN_ID ACU36798.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_2870"
/inference="protein motif:TFAM:TIGR01643"
/note="TIGRFAM: YD repeat protein; KEGG: ypp:YPDSF_0222
membrane protein"
/transl_table=11
/db_xref="InterPro:IPR006530"
BEGIN
1 MTPGPGAGVV DTGLTESATE LRASLTNGSW LGDAPSAGQD DLPSLGEVSD PFKPLSQAGV
61 EWLVEHVAPL QRALDELRGD PATVTAQAET WSAVATELAT IASDLVAAVA ADTTAWTGEA
121 ADNYRVRAEQ TAALLTAASQ GAHGASGGLR KAGELVGAVR GLVRDVIADA VDNLVKVALQ
181 IVGTGGVAAP WTIPQISQTV AATAARITAL TSKLLDALRR LTPLLTQTGD LFGEATTALR
241 TLQTATAPIP STTLAAAAPL PPQSPEPSQA AGPSQSSGAP QTAVTADQQS GMSQPGTPGT
301 NSDTHGGSNT DNPGAALQPG AADLDTPRTG TASLGTAEPD AFRSGAPSPS TADTTNPSGA
361 STVPQAAAAQ TAPVQASGAM QSSVAQPWLQ SADQSLEQPV PQQAVQAEAT PDLTQSTGAT
421 SAWPPSPAES VWTLPPSDPP VTQVYAEAFA WPTPSADAPT ATSAAETQWP PMSTQPPSPT
481 STGADAFAWP PGQADGMTSA VGTPVAEAGW PRAEGTTTTS SADLATAPRA DLPITTRPEV
541 PAGVPASSAS DPVGQQAAPQ AAGSRQGTTH PDAAKQAQVK REEKRGELPA FDAPTLLSGS
601 SAHSGIQPPA PPVTTTGSAA SFEPAASQHP PVEPPTLRIA VSSRATTKNE TTDLGASGGS
661 PSVAPLSGES VPDVPGTDSV AASAENSASP LGGTSTAGVS EGAEPTARVS RTSLPLVEPA
721 GESPAAALTA RVSRSELQLA AEPDSGPAAV PENPAPAPSA PAGRTIAGEA ASPKGAHDNP
781 FANRPTHGDP IDVTTGWVVL PQTDVDLAST LPLLLTRTHV SHYRLGRSFG PTWACSADQR
841 LEVDPEGVAL AVEDGTLLLY PHPADNAEAL PESGPRWPLV RTATGGYAVH RADRDQILHF
901 APGPDRERLL AAITDADGRC VQFRRDERGA LVEVAHSGGY RVLVDTEDGL ITAYRLAGAG
961 TEVLLGEFRY DERRNLVAAV NSSGLPLRFE YDDLGRVARY EDRNGMWYRY AYDDEDRCTA
1021 AEGAGGYLSC RLDHAPGLTT VTDSLGNTTT YQVNERYQVV CETDPTGART VSEWDAHHRL
1081 LSRTRPLGLR TAYRYDDRGD LVEAVLPDGS RLRTEHDGTG RPVVITDPDG AVWRREYGPN
1141 GALIAVVDPM GARTTCTYDE GGDLVEVTDA SGATTHYEVN SLGLVESVTD PMGGTTRYEY
1201 DELGRRAVVI DPAGGRTRFT WTPEGGLAGR VDPDGARSVL RRDGEGNLRE HTDATGAVTT
1261 IEVGPFDLPV AEVRPDGSRL EFRYDTELRP VAVVNEHGQE WRYTYDSRGH LVSEVDFDQR
1321 ITTYVWDQAG RLHGHANERG ESVMLDLDPR DRVVAVHTAQ GRTDLAYDPV GRLLRAKGPD
1381 ADLVFTYDPC GRVLSESVDG RVLESRYDVL GRRVTRRTPS GALSVWAYDL LGRPTALRAA
1441 GRTTRFSFDA AGREVERRVD DGVLVAQVWD EVDRLRSQTV VTGLRSTTPA LAQRRTYGYR
1501 PDGKLVSVYD QVTGGQVLDL DEVGRVLAVR GPSGTEVYQY DRTGNVVHAH WSGSEPGAGP
1561 REHDLMRVTR AGDLAFTYDE AGRTSSRSVQ RPDGGVDTWE FEWSAQDRLL SARTPNGSLW
1621 RYGYDALGRR VWKKRMADDG VTPVERVDLM WDGAAPAEQF TGAESLVWDH APSTGHVVTQ
1681 TERSRVLAGT RSLPPQGAAA QQATTGPAGA VGSAGSAQGQ PNYAARLGQG SRSGEGDQVE
1741 RLELRGEGDH FGQGNHPHPD QGNHPHPDQG DDPGQGSHVN RTGHADQAGH ADQAGHADQA
1801 GHVDQVGHAD QGGYADQGGR VDQSGHGGQA GRVDHGGRTE QVSRAELIGG VERSRHGEPG
1861 GRVEQQGVRA EQGVARGELG EAGGQWVDRR FLAVVTDLVG APADLVDPDI GSILPKRPAT
1921 LWGVSSGHSW TPLRFPGQHH DAETGLHYNV HRYYDPATGR YLTRDPLGLA PAANPWTYAD
1981 NPTAAVDPVG LVPCSPLSGR AVSGYLSGWA PPVGRFGAAS PERLLPSAST PFPQRGYGVG
2041 EVGRTHPAHA ELGPWHSRAG NSRAGNSRAG NSRVGNSRVG QSVTGRSWAG IPGASTPDMG
2101 EPSVVAAPMA GTCGSRLQEL ADRHQRDLYG DTTSSGNHRS GDER
//