LOCUS ACU36616.1 1816 aa PRT BCT 24-DEC-2013 DEFINITION Actinosynnema mirum DSM 43827 short-chain dehydrogenase/ reductase SDR protein. ACCESSION CP001630-2642 PROTEIN_ID ACU36616.1 SOURCE Actinosynnema mirum DSM 43827 ORGANISM Actinosynnema mirum DSM 43827 Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema. REFERENCE 1 (bases 1 to 8248144) AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O., Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C., Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P. TITLE Complete genome sequence of Actinosynnema mirum type strain (101) JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009) PUBMED 21304636 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 8248144) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Actinosynnema mirum DSM 43827 JOURNAL Unpublished REFERENCE 3 (bases 1 to 8248144) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082379 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Actinosynnema mirum 101, DSM 43827 Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064 GOLD Stamp ID :: Gc01024 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 8.9x Sanger; 20x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: "Blade of grass from Raritan River NJ, USA" Collection Date :: September 1976 Isolation Country :: USA Latitude :: 40.491816 Longitude :: -74.322087 Oxygen Requirement :: Aerobe Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 10-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Nocardicin A producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Actinosynnema mirum DSM 43827" /mol_type="genomic DNA" /strain="DSM 43827" /type_material="type strain of Actinosynnema mirum" /db_xref="taxon:446462" protein /locus_tag="Amir_2681" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; KR domain protein; Acyl transferase; Erythronolide synthase docking; phosphopantetheine- binding; NAD-dependent epimerase/dehydratase; KEGG: eca:ECA0602 type I polyketide synthase" /transl_table=11 /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR006162" /db_xref="InterPro:IPR006163" /db_xref="InterPro:IPR013968" /db_xref="InterPro:IPR014030" /db_xref="InterPro:IPR014031" /db_xref="InterPro:IPR014043" /db_xref="InterPro:IPR015083" BEGIN 1 MENEAKLLGY LKRATADLRE ARRRLREVER RENDPIALVG IGCRFPGGVT GPDRLWDLVA 61 GGVDAVSSFP TDRGWELDSL YDPDPDKRGH SYAMAGGFLH DAADFDAAFF GISPREATAM 121 DPQQRLLLET AWEAFEHAGI DPTTLKGSRT GVYAGLMYHE YTSRLTTVPE EFEGFIGNGN 181 AGSVFTGRVA YALGLEGPAV TVDTACSSSL VSIHLAVQAL RRDECSLALA GGVTVMPSPE 241 TFVDFSRQRG LAPDGRCKPF SDDADGTGWS EGAGVLVLER LSDARRNGHR VLAVVRGTAV 301 NQDGASSGLT APNGPSQQRV IRAALANAGL SAEHVDVVEA HGTGTSLGDP IEAQAVLATY 361 GQDREHPLLL GSIKSNLGHT QAAAGVAGVI KVVMAMRHGT VPRTLHVSAP TTHVDWTAGS 421 VRLPLEATPW PETGRPRRAG VSSFGISGTN SHVVLEQAPA PQAAEVPAPD AAAGTAEAEL 481 PRVETDVVPW VLSARTPEAL AAQVRRLRGA AQGLDPVDVA FSLATTRAHH EHRLAVIGRT 541 AEDFAAALAE GAPGSVRGVA DKGRTAFLFT GQGSQRIGMG RELRAAFPVF REAFDAACAL 601 LDRELEVSLA DVVLGEDREA LDRTGFSQPA LFAFEVALYR LLESWGVTPD FVAGHSIGEI 661 AAAHVAGVFS LEDACALVVA RGRLMQALPS GGAMLAVEAT EAEVLPLLND RVGLAAVNGP 721 SAVVVSGAEA AVDQVAAALD GRRTKRLRVS HAFHSPLMEP MLDEFRRIAD KVSFHEPLIP 781 FASTSTGGPA TDAVATAEYW VSHVRDTVRF HACLEHLAGH GVTRFVEVGP DGVLTGMVER 841 GAAVATQRRG RDEVVALTTG LAAAFAHGVD VDWAAFHAGR GGQRVDLPTY AFQRKRYWLE 901 SDGPSGDATS FGLQGGEHPL LTAVVETPAS DGVVLTGRLS AGTHAWLADH AVHGTPIVPG 961 TGLVELAVRA GDQVGCDLVE ELTLEAPLPL PESGALALRV TADAPDEHGR RTLAIHSRPE 1021 GAQPGEEWTR HASGLLGTAR DSAPEQLTAW PPEGAEAVDL EGFYPRLADN GYGYGEVFRG 1081 LRALWRRADG ELFAHAVLPE SAHADAARFG LHPALLDAAL HANLADGSEE RTPLPFAWNG 1141 VTLHAQGATE LRIHITQTGP DQLSVAVADG QGAPVATIAQ LVVRPVSAEQ LGGTAGRGYH 1201 ESLFRLRWTP AKAGAVPVPT AEDWAVLGQW PTTTATAHAD LAALRAHLDG GAPPPEVVLA 1261 PIAPASQVSP GDVPAEVRGS THAALALLTG WLADDRLTGS RLVVLTRAAV PADPTRAPLW 1321 GLLRAAQAEN PGRFTVVDVE PGSEDLLPAA IGTDEPELAL HEGKILVPRL HRAVLPETTA 1381 STWRPDGTVL ITGGTGGLGG LLARHLVTEH GVTHLLLTSR RGRGAPGAAE LEAELENHGA 1441 QVDIAACDAS DADALTALLA TIPAEHPLTA VVHAAGVVDN ALLADLTPEQ VDAVLRAKVD 1501 SAWNLHRLTE GLAAFVLISS SAAVVAGAGQ ANYAAANAFL DALAEHRRAH DLPATSLAFG 1561 LWAGSGMGAD LDDADLRRME RLGMPALPPA EGLALFDAAL ATDEAALVPM RVDLMALRAR 1621 VDDLPAVLRG LVRVPARRAA LTASGADARP LADRLAGLPA VEREQLLLDL VRAHAASVLG 1681 HAGVEEVTPT RAFKELGFDS LAAVELRNLL GAATGLRLPA TAVFDHPSPQ ALARELLGQL 1741 VVEEDHARSV LAEADRLEAA LASVADEDAA RVTARLEALL RTWHDARGRA EDAGHDLGEA 1801 TDEELFAVLD NELGIS //