LOCUS ACU36450.1 1295 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 VWA containing CoxE family
protein protein.
ACCESSION CP001630-2476
PROTEIN_ID ACU36450.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_2512"
/inference="protein motif:PFAM:PF05762"
/note="PFAM: VWA containing CoxE family protein; KEGG:
ecs:ECs2930 hypothetical protein"
/transl_table=11
/db_xref="InterPro:IPR008912"
BEGIN
1 MADRLADHRE PVLIGVRHHS PALAAAMPAL LEAADPEVLL VELPQELGEW LPHLADPDLL
61 APVALSGAAR DGGSLAFYPF ADFSPELAAI RWARRNGVEV RPCDLPIALR GDDHRGGHDH
121 GTPLADALRG VITGRDGDDL WDRLVEAAAP GQSPESVRRA ALLVGLALRR DAEGPDGDGV
181 GGFDLRREEW MRHAVADVAG CRSAAVVGSF HAAALLRGPD GDRPTGSGPE VVTSLVPYGF
241 ALLDERSGYP AGIRDPEWQQ AVYESGGDAA AVESSAAAFV VRICARVREL GHPAGPGEAR
301 EALRLAVDLA KLRGLPAPGR GELVEAVQSV LTHAEPLGRG RVVARAAGDV LVGQRLGLLA
361 PGTPRSGLAP AVEALVQELR LPGPGSTEPV QLRLDPLRSP LDARREVALR RLDALGVPYG
421 GETATTGVGG GEALTTRWTV AWTPATAATL PVAGMWGATL ELAARGRLMA RRAERERGGG
481 HTPAEVLADL AEAAACGLPD VVGVLLDDAA AVLPTSGTLH DLLAALSLLD RLRAGHLPGT
541 PGEVLDGHPV LSRDLETAAV AQLEGLAGSD DPADARALVE LGQRHDAHGT GVRLAVALRE
601 LSDGAGPLIA GAAGATRVLL GLAEPAELGE RVASWIDTAG TPEGRDALKR ALTGVLAAAT
661 ALLETTEALE PLLDRVESLA DRAFLDRLPA LRGAFTTIGP AARARVLAVV QERVGARVDR
721 AGDPDPELLA LWLGAEREAA EALRLHGLTG TVAGGGGAGA VEAAAVASTA VGGAVTGADV
781 AAGPAATTAA GATGAAAAGG AAVAGGAAAA TGSAAGGPAA DALPPPTSSA ATTTAVGVSA
841 SASEPGVSAP TSGDGAGAPG AAGAGPLAGP GGEAGSAGSR AAGGDTVGRE APGAVAVGGG
901 EAAADPADPA VADLGPVGAE GAETAIPAEL PPVLRWRLLL GARGDRPAGG GRYAAALDEL
961 YGHDRGEGAD SGSLGGSAGG DGDPFPVVRE WSDELKALFG DRVREEVLAA AAEGGRLEAA
1021 LEIDPTSVRP SVDLLRNVLS LAGGLSEDAL ARLRPLVARL VRELAEQLAN RIRPALTGMQ
1081 LPFPTRRPGG KLDLPRTLRA NLATARRDEH GKVVVIPERP VFRSRGRKAN DWRLILVVDV
1141 SGSMEASTVW AALTASVFAG VRSLTTHFLA FSTQVVDLSE RVADPLSLLL EVKVGGGTHI
1201 AGALRHARDL VTVPERTMVV LVSDFEEGGP VASLTAQVRE LVSAGVTVLG CASLDDTGQP
1261 RYSTSVAGSL VAAGMPVAAL SPQELARWVG EKVRG
//