LOCUS ACU36447.1 1632 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 hypothetical protein protein.
ACCESSION CP001630-2473
PROTEIN_ID ACU36447.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_2509"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: hypothetical protein"
/transl_table=11
BEGIN
1 MTATAARMIA AGAVLPGTDS TGEDRDTITA RHYGHPALGE RVVVKLVPSV LGKAEDLTAE
61 FLGFAPPARV EGVGTGRREA LGFPAWALVN DPANGHHALN LVKDVQRLAR MARSRAGAAK
121 DGFTALGDML GRSAPHFLPT FYEQAGRAFL DHGNTTYAAT MFGKAREAEE VHDLKVDNAR
181 TREVFLEFAF AGALTAKALS AHAKVLLKRA DPVEAYEGFL TLCVERTRGG LPPYTGMPED
241 LKRLVKAAKL DQAEQDERLL AALLDSASIP RAGQGFWKHY RNALVRMATA DPEVRSHLLT
301 FVPSAAAALP LWLDIVTACG ATRAYTDPVE TAPAAPRPAA EWLSDVIAVS HTNWGAQPRL
361 PKLLDLAEAM APRLVADGHE VRLLLGWRFY ALDLMDLLLT EGVPIAEPKR RDIDYQVGSW
421 LKDDEPGARD LAAVAASRFV ARLGDGVYNC LRSTTDKGLT TVDALLKVLA VPGLRVALAT
481 WNTARAADDA PRGLPALGER LEQIGVLAVP EVFADTPEVA QAFADTDVPQ VLADTLRAGL
541 FDELGWPALE EAVRALEAEK IKDDPGVVLA GGAWPVLVLR RAEKFVVVGP DGVLAEHQAR
601 IPADQRHRWS FDPTGTWHDG ALLVRWQGPD EELGYWSDAP SKIFQTSHEN SYYRGSTPEP
661 AITTPAGLFT GGRLLQRGDT HVPSPRRVYG DGVNLWTLGS LPQGGQGLVE VDPATGELGR
721 ASLPAFLEDF AAEGASLNVH SCALRPSVPA TTGSPLGEAN GLHGWRVRRQ ADKSWLAEGV
781 DGRRVHLADG ERYAPVGQLA LPGGGKLTLV SHYRNIELLD EHGVVVGSLD GVGQQYSDYS
841 AGTPLLPPLG WWHVLRPRDE AGSAALRAVT REAAEALLAA AVAEAALPKE ERDELPVAHR
901 WWLGALLRRV RGEKAPRDLV AEAVATALPG LTHPALVVGV SDLVRRAAKL LVGYRAFAPV
961 AEAARTADLD ALAPSGPVVS AEAVEGALDW FGGYRYRSGS SGAATLPGLI TALGQAAAGP
1021 VEAKALPQPD SNTWHEVLPE LPALLHRAAS PLTPEPEREA LVLLLRSLAD AGLVDGAGRW
1081 RLVGIVLPVK TQLTKHAVLP LGGGFATFTT HGSSREDDTY LVEGLQFSPE PGRFALPPKA
1141 TLSYSRELRG SLTGADVLRF LDVLAERGPA PWRADAPEEL AGLTGLGTSV SALLLAGMPE
1201 IETWGASFLT TEQRKLIGLS AAELKAARQG LRDTAKRFRR ELLAAAVPAD PVALWEGGPD
1261 VEAVARVWVG ARGRRVQVPD DVLLDASKSL TNRSPETTLA ALLNPERTEW LNTDARMHVV
1321 ENNLKMRESE GFTGHHLTVS VEALTWLAYR LPAASPLRSR LPVALELVRA RNASRDLAIQ
1381 LGTWRETVAV EKMLGITADR TIGAITNHGG WLDVVTTAEQ YCTLIAWPAR VRPQDRPVFQ
1441 ALAEQSYSSD VIACGDLLAT DALTELCTAV APEGTDPEVF FQDPAFSVPH LVEQAAERFG
1501 LSADAAVLYL QLLALPDPTD ANAARWTGWK PARLKKARAE LAETDLVLSA KRARAGRSLF
1561 LPGGWSDLKK PHLPVETWKA AMFDVAFGYE PAKRGGAIVP VEPVAALFER AWQRVLDGDA
1621 PAYEELRTGS RR
//