LOCUS ACU36446.1 1634 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 hypothetical protein protein.
ACCESSION CP001630-2472
PROTEIN_ID ACU36446.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_2508"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: acp:A2cp1_3940 TPR repeat-containing protein"
/transl_table=11
BEGIN
1 MTDPAALLAA GAVLPPATGA GQPDTDRSVP DRSGPDHPWS GQAATTTARH YRHPAAEGRV
61 VVRLAPEELG RAEDLTAEFL GFPVPERVRA VGRGRRVALG FPAWALVNDP ANGHHALALV
121 KDLERVSRQA SGRPTQAKEQ FLALGERLGR SAPHFLPTFY EQAARAFVAA GNPAFAAVLF
181 GKAREAERVH DLAVDHDRLR EVFLEFAFAG ALTAKALSAH ARGLAGRGDP AASYALFRAL
241 CVKRTQGGLP PYTGMPEDLN RLAKAAGLDQ RAEQRSVLSA LLGTTAVTRA NAGFWKSYRS
301 ALVDLARADA GVRRRLLEFV PADAAALDTW LGVLTASGAA DALTDPDGPP PPVTAAHWLA
361 TAVATAHPVW DPNPRSQALL DLVERMLPRL RADGHPVELL RGWRTHALDV LDLVLAGGVP
421 VAPPLHPDSY LTVGKWLADE APGRRDLRAL AASEFADALG EGLVVHLERA VRADVVDAGA
481 LAAACAVPGL RAALGAWITT RSPGPGPHGL PALRERLAEL RVVGIPEAFA DVPEAADAIA
541 ATDVTAAVLT TLRAGLYDEL GWPALDRAHE DLAALPPGDL GTRIVGEGWP ALVLGRGERL
601 VVVGPDGVLD EHRLRVPADQ RHGLFFRVGA DWHDGSILVR WPSPGGERAY WSHAPGSPFP
661 LTDRRPGFHR AGALRGSIAV GDGRFAGGRV VQLGDTDLPV PADPLGDGQG LWAYRGEPWD
721 WHLHEVDPAT GDAGRASLPA FLEDFATTGA QLVHEVCELR PAVPETANSP LGAANGLHGW
781 RVRREADRSW SAEGIDGRAV RRPKGGEIPA GLLHLPSGGR LVLMAVHNGL RLLDVDGTEL
841 GRLDALGDEP CQEGAAGSPV VPPLDWWHVL RPRDEAGSAA LRAVTREAVD ALLDAATDAD
901 GQVDELDEHD RQGWLAAVRR GEPDALAEAI TAALPGLTHP GLIAGVADVV RRAALLRAGF
961 RAFAAFADTV RALGPEALAA TGPTITDWQV DDALSWFREP YRATTAPVPS GLPTAIAALG
1021 RAAGAQLTEP TPLPPLTCHY WTDHLHALDA LLYRAASPLT PADQRAALVA VLRATVAAGL
1081 HDEPGRWRNV VVRCPETTPA NVALPTADGF LVTYYRRRDE GGGVIQAVGL QFTREPDSPS
1141 PPPGMALLEV RPARGALSGA NVLRFLDALA ERGPAPWRPD AGPALAALTG AGRVAATALL
1201 TGMPGLRFRP KVFLDAAERA LVGLSSAETA SAGPVLGALS DRRKLVLLAA AVPADPLALW
1261 ESGPDVEAVA REWTAVHGKR APLPEDLQVL VNRELWHDEE QRRVSDLVNP DLARWLHVDG
1321 DTTLVDAEPV ASDKTAFDDD DLSGAPGALA WLAYRLPAAS PLRPALARSL DLVRARLAHE
1381 GFAFLLADLQ DTAAITDLTG VEVGPVGEVG RHREWLEVAR SHFSFCALLV RPALLRPQDR
1441 PLLDALTEVL HARWPVSRLR LALDPGLAAA CAATAPGGTG PDTYFQDPAF SVPHLVERVA
1501 DRHGLPADAA ALYLQLLALP DPTDANVARW TGWKPARLKK ARAALADTDL VVGGRRSRAG
1561 RSLFLPGGWL DQRKPRLPLE VWKTSLYGDV GYPDHSTGVI APAEPVADLF ARAWERVLTG
1621 DAPAYDPLTT GGDR
//