LOCUS ACU36310.1 1433 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 multi-sensor hybrid histidine
kinase protein.
ACCESSION CP001630-2336
PROTEIN_ID ACU36310.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_2370"
/EC_number="2.7.13.3"
/inference="protein motif:TFAM:TIGR00229"
/note="KEGG: dal:Dalk_3918 multi-sensor hybrid histidine
kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding
region ATPase domain protein; response regulator receiver;
Hpt domain protein; PAS fold- 4 domain protein; PAS fold
domain protein; histidine kinase A domain protein; SMART:
ATP-binding region ATPase domain protein; histidine kinase
A domain protein; response regulator receiver; PAS domain
containing protein"
/transl_table=11
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR008207"
/db_xref="InterPro:IPR013656"
/db_xref="InterPro:IPR013767"
BEGIN
1 MVLGLLVATG LWVWPSPTTT GVVFGVGVAA LLVVTARLGT ARWWVLAAAQ VIASAGWVFG
61 MPALPEVGGA IAVAALLGLA RPRGTALLDL CVVALSTGVL VWALPTSQPV LELVTAVLLL
121 SVTAAAFLVV GTPRRSRLLH WAFTWFLAVL LTPVTPVVAL LAPVLLTATL PAPDAGRGPR
181 VLVWGSRAVL VGCVAPLPLL LVQRALQSSI DDVVGIAAVS LIATVPVLVR VSLRHRDRTD
241 DPRLRRRLRN RTVRVCLVFA VAGLLPLGVL AQLSVAVASQ TVTAEVERRL DASAQVAAAE
301 LANTLDSARA LVRSYAERPE IREANFAEGV GALDAVREAV TSLQRQNPMF EATWAMDADG
361 TLVAVSPGPS TPPRNNFAYR DYFQGALSTG GPYVSQVYEG LRADHPELVA IAAPVRVGSE
421 IVGVIATSFP IGALTGFVSE VAAGQDVRLA VADRGGSLLT GEQLGVPGLT SGLGDPQIAA
481 ALRGQQGRAT TGPDDNPVET SYRSVPGLGW AVVASIDSRT AFAGVARFTG RVLAVTTLLL
541 QMLLVGLVVT VRGERRGRLA EERLARSAAH TDSILNAAGD AFVTIRPDGI VTRWNSSAER
601 IFGWTGEEAL GSALVDLVVP DPQRADHLSG VRRIIEGSRP TVLGTTREVV ARRKDRSEFP
661 AELTLWSSHY EDRRVFSAFI RDITERKAAE EEIARARDEA LSASRMKSAF VANMSHEIRT
721 PLNGVIGLTE LLLDTDLDCR QRDYAQTLQN SADALLAVIN DILDFSKIEA GKLEIDPVDF
781 DPRALVEDVV SLLAASAQAA GLEIAAVVHP PMPPTLVGDA HRVRQVLVNL VSNAIRFTPK
841 GEVVVWVDVA PAAPGESGHE VTFTVADTGI GIPDERQQHL FEAFTQVDAS TTRQYGGTGL
901 GLTISKQLVE LMGGEMGLAS EPGEGSVFYF TLPLPPAAAP PAPPTARPDL SGLSVLVVDD
961 NATNRQVVSE LLGAWRARVV CADGADEALR ELRAAVDGGR PLDVALLDMR MPGLDGLGLA
1021 ALIRADRRIA GTALGILTST SDAVEAKRAR AAGIEVYLAK PVRAKALREA VARLVDGDAP
1081 QPGAEPERPA VGPVRAGTGL RVLVAEDNEV NRLVAVEMLT ALGHRVDVVP DGEQAVAAVR
1141 GEHYDAVLMD CQMPVLDGYR ATERIRALTP PRGSVPVIAL TASALASDAQ RCREAGMDDF
1201 LSKPLRRDVL EAALLRAVRS PAPRPRREGD GAVAVGVRAG HGGAGGGVPT GFGGGGRGSA
1261 GRAGSGPSAR VDAEPPPDAG SAASAAPAPN VADLRAPDRP GLPDADLLDP EMVDQTRDLG
1321 PEAAARLLES FTGRAPDKAA AIVAAVRAGD PTLVGGLAHG LQGSSVTLGG RVLGAACERL
1381 VAAAREGDLG LAERLAVEVE SLTGRTCAAL TTALAPPAPF DPVTRPRSTG RDR
//