LOCUS ACU36254.1 1057 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 hypothetical protein protein.
ACCESSION CP001630-2280
PROTEIN_ID ACU36254.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_2314"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: SNF2 superfamily protein"
/transl_table=11
BEGIN
1 MSTRLLLEGP NLTALLDQVA REHGKDARIV SAEKLRKGGV MGFFAQRWFE ITVEVPDGGA
61 SGAGSGKGSA GQGAAGQGAA GKGAAAQGSG SDSLDGLLAM ADRADGAERT PVSADELAAA
121 KAGEQAPAGP VAGSLPQGVS SDLTARRSPA TAPNGLVSAE SQALVAELAA ARAAGLTEEQ
181 IAAAIALASN NSGLPAVTQA ALAAHGVGER GAALGAAQAA VAQAGITQTA TQAGVTRAGL
241 AGLDAVQAAE AHAEAHRAAQ AAAAAAYASG AGRIAVHSTP EPTTSTLGTG LTGAAPAGVA
301 VAQTAAEFAS QQTAVTAPAA PAPVTTTQAL ASAQLVATAQ VADNALQAPV HAAPVLGYEE
361 PGLAIAQLNI AGHPVTTAYG SAEAQRLAFG QADEVGRLAT GPATTAAGEP ITAGQHHDAS
421 QADGVGHFAP GAFAASQHAQ QVIPQHTAQP VAAVLAAGQQ VAASAEGFAQ AGHAAGRTAA
481 QAGVTPVVAA VAGSTTAPIA AQTTTGQTVA GHPAAGIAAA GHPTAAISTT PVAAALATSV
541 AAPAVVAAPQ ASALVAGPES ALAHTTPATV AAHAQQGGAG RLQHVQHVDS PGYTAGAAWT
601 PAETASMAEL AAAKAGTAMA AIVADLAAEQ GKPRTTVLHG AQAACLSRAP IAETAADAAE
661 QARAAKAAKD KRAEELRAAE AAKSEEALAA RESLALERAA RAEAERAREV AEARLASMEA
721 DEAAARAEGR AAAEAAVAEA APAPLLVPGA VTAKEIAEAV AQIMGGAKES GAETAAGTAA
781 TEAPATVQAE IPVQPTPKPK ATTRTTRSSG SKAAVKPKTP KAKPAAASKK PAALPAPKPV
841 PRRATMYTGR PRPACEVEVD LTGTPLPDQR TESPRPLRPL RTAGPAPAAP ALPGQVLVVA
901 GELEHALDVA NAVCRDLRID PSDVLVAGPT TSGHRRVASA RHAAQVATEL HAAETPSVVV
961 VQASVDEADG AQWAAEITRA LGASAVWAVV DATRKSRDLA RHVRELGDVV AMAVHGAAAS
1021 ADPTTVLELG LPIVAVDGKR MSSTGSAATA LADLVAA
//