LOCUS ACU36203.1 1115 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 hypothetical protein protein.
ACCESSION CP001630-2229
PROTEIN_ID ACU36203.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_2263"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: similar to CG6915-PA"
/transl_table=11
BEGIN
1 MDLGPPHGIR FRFSTGLVRA VLLDAHGKPP LPLAEALSID VGTRELAVAE DHGDPLRAVL
61 RQRYDLAEPV EWRLHVPGDA SVDGDGVQFA LPTGTSVRVT STGQVSATED GVVVALPPGP
121 AEIDVEVVSE PQYAVSDTVV VCRAHQAREA AVVVSCLPGD RFTPVVALDR PPPAGGRHAL
181 PGEHDDELDA PGPDTGPLRS WNNRNSLLAD LMRATGVRRA VVLADPPPQA AHVFDGMEHV
241 RLLKPDLLGE DLTDEVWALL HGEDRQPPKV LEAAPGDDPA QALYTALRTG SALRFTERAD
301 PVADRFAAAG PESGDEAVLV ETTGEADDLV AACYAHHRGA RLVTTPQPDL DEVGRVVAEE
361 QARVTEAASA IGDAVKGIAV GEALWRYLST GGHDPYPAVE SVVTAQVPAD AVHAVGERRL
421 TAFTAGLPYP FVRTATGSWA RKPIGHVTTD PALVVLTELH REGACRPRGA FALLVDPGFP
481 AAPADRAAHV THPVVLTGAE TALPVVAALA ADLPVEVLAV NAHDAEGNAL LDGSPLPPWL
541 VAHALDLPHQ PVVLNNSCLS WTDQAREYLR VGARGYVGAL WRIPPDLAAD FTRVVVRRLT
601 AGEVPAARAV VDTGLPGGIE RSYLYAGTAN GRLDRWRAGA PGEGESALTG CALLAGVDHG
661 GEEVLRKVVH REMSALRRAA ETTPASGTEA YVDTLFDELS FAGDLADAAE VVEKIDKALP
721 ALDLPPAEAD RRWAARYERT GALHENGGDP GAALADYGRS ASYGDAGPDR AGVLLRMAAL
781 EARPQEALRL ASQAYRAAVT AGDRDTEFHA CSSLNDLGRR TGDLDTALKY AVIGHDLAAA
841 RGDRVRQTAF KVDECALRRE LGDPDGAIEA GTDALELVRA QGDPATELRV IGELARCHEA
901 RGDLAAALSY TKAGLSLSEH QDAPGEFARF QDETGRLLTR RGEHAEALRH YRGAVEGLVA
961 RGSLERGAEL LPHLAVGAVR AGDAGALWTT ALCGGLVCEV VERDVWQALV PLVVDSMKRA
1021 IEIGSAELTQ RGMTDFASAV TAGRRDDMPV QVGVLSDVVV LLLAWLMGRI DDSMLAFGRE
1081 VDRQTGGVLD LVGYVSTPYA QRVRGGAVAG RWSAR
//